Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00768 ATGGCCACCTCCCAGTCCCAGCATCGCTGCGTTTTCGTTGGGAATATACCGTATGATGCCACAGAGGAACAGCTTGTCGAAATCTGTCAGGAGGTTGGCCCAGTAGTGTCATTCAGATTAGTTATTGACAGGGAAACCGGGAAACCGAAAGGTTATGGATTCTGTGAGTATAAGGATGAAGAAACAGCTTTAAGCGCTCGACGAAATCTTCAGGGTTATGAAATTAATGGCCGGCAATTACGTGTTGATTTTGCCGAAAATGACAAAGGAACTGACAGAAATAGAGAACAGGGTCGTGGTGGGCCTGGAATGACAACAAATGTTGACCCTCAGAAACAAGTTGGTGGCCCAGCTGGGGAAGCTGTTCAGCATCAGCCTATTGGTCTTCATATTGCCATAACAGCTGCAACTGTCATGACAGCAGCTCTAGGCGGTGCTCAGTTTGGCATCCAGTCAAATCAAAATAGTTTGCAGAGTCAGTCAGCATTGGCACATGATCCTTTAACCCTGCATCTGGCCAAAATGTCCAGGAGTCAGCTTACGGAGATGATATCTGAACTCAAGGGAATGGCTACACAAAACAAGGATCTGGCTCGCCAGCTGTTGCTTTCAAGGCCACAGTTGCCCAAGGCTCTTTTCCAGGCTCAAATAATGCTAGGAATGGTGTCTTCCCAAGTGTTACAAATGCCAAACCTTAGGCTGGTTTCAGATCAACCCTCACAGTCTTTAATGAATGAAGGTCAGCTGGCTCAGCCACCATTGGTTCAAACTCTGCCAGGCCTTCCTCCTCATGGGCAGAGCAAATTGCAGTCTGGTTTGACACCTTATGGTCAAGAAGGCCAAGTCAACACCATACTTCATAATCCTCTGGCTCCTAATCAATTAACTGCTCATCCAAAGCCTCCAGTGCAGCCCCGAATTCCCGTTCAACAACATCCAAACAACCCTGTACTGCCTGGAACTTTGTCAGGGCAGCCTAATTTATTACTTCCTTTTTTGCGCCCAGGTCTGGGAAGTTTGTCTGTCAGGCCTCCAATTCAACCGACAACTTCAACTGCTCTAAACCAGCAAATGCATGTCTCTTTGCTACAAAATTCTGCACATGTTGGAAACTCAACTGTCGGACATAATATTCAAATGGTTCGTCCAGATGCCAACTTTCAGCCTGGTCCCTCCATATCGGTGTCTACTTCTCAGTTATTGAGTAAAGGTGATAAATCTTCTAATATAACGTATTCAAACATGCCTTTGGGAGTAGAGAAAAAAAACAATGTTCGTGATTCTTCAGAATCTTTTTCTCGCCCATCAAAGCTCATGAAATTGGATGAGGGAAGGAGTACACCCCTTTCTACTGGGATGTCAGACGTGCCTGTCACTGATGGACCGTCTCATACACTTGGAAGAAGCTCATTGTCTGTACTTGCTACTCCTAAAGCAGAAGGGCAATACTCTGAGCTACAATCTTCTCAGCTTCCTCCTGATGTGCAGTCTGTTTTGCTGCAACAAGTATTGAATCTGACACCAGAGCAATTGAGTTCCTTACCACCAGAGCAGCAACAACAGGTAATTCAGCTCCAGCAGGCTCTTCGGCGAGATCAGATGCAGCCCTCATAA 1614 0.461 MATSQSQHRCVFVGNIPYDATEEQLVEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGTDRNREQGRGGPGMTTNVDPQKQVGGPAGEAVQHQPIGLHIAITAATVMTAALGGAQFGIQSNQNSLQSQSALAHDPLTLHLAKMSRSQLTEMISELKGMATQNKDLARQLLLSRPQLPKALFQAQIMLGMVSSQVLQMPNLRLVSDQPSQSLMNEGQLAQPPLVQTLPGLPPHGQSKLQSGLTPYGQEGQVNTILHNPLAPNQLTAHPKPPVQPRIPVQQHPNNPVLPGTLSGQPNLLLPFLRPGLGSLSVRPPIQPTTSTALNQQMHVSLLQNSAHVGNSTVGHNIQMVRPDANFQPGPSISVSTSQLLSKGDKSSNITYSNMPLGVEKKNNVRDSSESFSRPSKLMKLDEGRSTPLSTGMSDVPVTDGPSHTLGRSSLSVLATPKAEGQYSELQSSQLPPDVQSVLLQQVLNLTPEQLSSLPPEQQQQVIQLQQALRRDQMQPS 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00768 537 MobiDBLite consensus disorder prediction 83 120 - -
Vian3g00768 537 Gene3D - 490 536 IPR038192 -
Vian3g00768 537 Pfam Hinge domain of cleavage stimulation factor subunit 2 158 228 IPR025742 -
Vian3g00768 537 FunFam Cleavage stimulating factor 64 2 118 - -
Vian3g00768 537 Pfam Transcription termination and cleavage factor C-terminal 498 531 IPR026896 GO:0031124
Vian3g00768 537 MobiDBLite consensus disorder prediction 389 418 - -
Vian3g00768 537 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Vian3g00768 537 MobiDBLite consensus disorder prediction 384 467 - -
Vian3g00768 537 CDD RRM_CSTF2_RNA15_like 9 85 - -
Vian3g00768 537 FunFam Related to Cleavage stimulation factor 490 532 - -
Vian3g00768 537 SUPERFAMILY RNA-binding domain, RBD 5 105 IPR035979 GO:0003676
Vian3g00768 537 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Vian3g00768 537 Gene3D - 149 230 - -
Vian3g00768 537 MobiDBLite consensus disorder prediction 447 467 - -
Vian3g00768 537 Gene3D - 1 120 IPR012677 -
Vian3g00768 537 SMART rrm1_1 10 83 IPR000504 GO:0003723
Vian3g00768 537 FunFam Cleavage stimulating factor 64 155 230 - -
Vian3g00768 537 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00768 Vian-Chr3 8073990 8080460 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00768 11 84 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 2.31e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00768 K14407 - gmx:100794399 847.81