Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00759 ATGGCAGCAGCGGTTTCTTCACCGATGACTCAATCTGTGACTGCAACAGCGGCTCCCGTAACTGCATTGGGCGGAGGACCATTTTCAAATGCCTCGCTGTATGTGGGCGATCTCGACGGAAATGTAAACGAGGAGCAACTTTATGATCTTTTCAGTCAAGTTGCTCAGATTGTTTCAATTAGGGTTTGCAGGGATCAGAGCAAGCGATCCTCTCTTGGTTACGCTTATGTCAATTTTTCTAACGCTCAGGACGCAACCAATGCTATGGAACTTCTAAACTTCACTCCTGTCAATGGAAAACCAATTCGAATTATGTTTTCTCAACGTGATCCAAGCATTCGGAAAAGTGGACAAGGCAACGTGTTCATCAAGAACCTGGATACATCAATTGATAACAAAGCATTGCATGACACTTTTGCTGCTTTTGGCACTGTACTTTCTTGTAAGGTGGCTACTGATAACAATACTGGTCTGCCAAAAGGGTATGGTTTTGTTCAGTTTGATAATGAAGATTCTGCCCAGAATGCAATCAAACAGTTGAATGGCATGTTGATCAATGACAAGCAAGTTTACGTTGGACTCTTTATCCGGCGTCAGGCTCGGACAAATGGATCACCTAAATTTACTAATGTGTATGTGAAAAATTTTTCTGAAGCATTCACAGACGAGGATCTCAGTAAGTTGTTTGGCTCTTACGGTACCATAACTAGTGCAACTATCATGAAAGATATGAATGGGAAATCTAGATGTTTTGGTTTTGTAAATTTTCAAAATCCAGATTCAGCCGCAACTGCAGTGGAAAGACTAAATGGTACCGCCATTGATGATAAGGTTTTATATGTGGGGAGGGCTCAGAAGAAAGCAGAAAGAGAGGCTGAATTGAAAGCCAAAATTGAGCAGGAAAGAATAAGTAGATATGAAAAATTACAAGGTGCTAATTTGTATTTGAAAAATCTTGATGACAACTTCAGTAATGAAAAATTGAAAGATCTTTTTTCTGAGTTTGGGACTATAACATCTTGCAAGGTGACTGTCGACTCAAATGGACATAGCAAGGGATCTGGTTTTGTGGCTTTTTCTACACCAGAGGAAGCAAGTAAAGCTTTGAATGAAATGAATGGCAAGTTGATTGGACGAAAGCCTCTTTACGTTGCTGTGGCCCAGCGCAAAGAAGAGAGGAAAGCTCATTTACAGGCTCATTTTGCTCAAATCCGAACATCGGGTGGAATGACACCTCTGCCTGCTGGCATTCCTGTTTATCATCATCCAGGGGCACCAAGACTTGCTCCTCAACAATTATATTTTGGTCAAGGCAACCCTGGCTTCATGCCCCCACAGCCTGCTGGATATTCATTCCAGCAGCAAATTTTGCCTGGAATGAGGCCTGGGTTTGCCCCCAATTTCATTACTCCTTATCCCCTTCAAAGGCAGGCTCAGTCTGGACACAGGACTGGAGTTCGACGAAATGGAAATCTTCAACCAATGCAACAGAGCCAGATGATGATACATCGTAATTCCAACCAAGGGTTTCGATACTTGCCTAATGGTCGAAATGGTCCAACTATGCCCATGCACTTTGATGGTTCTGGAATTAATGCAGCACCTAATGATGGTCAGCGTTCTGGAGCATTGTCTACTACACTTGCATCGGCTCTTGCGTCTGCCACTCCAGAAAATCAGCGCATGATGTTGGGTGAACATCTGTATCCTCTTGTGGAGCGTCTCACATTAAACCAATACACAGCAAAGGTGACTGGGATGCTACTGGAAATGGACCAGTCCGAAGTAATTAATCTCATCGAATCTCCTGAGGACCTGAAGACAAAGGTGTCTGAGGCTATGCAGGTATTATATGAGGCTACACCTGAATCTGGAGTTGCTGATCAGATTGGATCGTTATCCGTAAATGAATGA 1914 0.43 MAAAVSSPMTQSVTATAAPVTALGGGPFSNASLYVGDLDGNVNEEQLYDLFSQVAQIVSIRVCRDQSKRSSLGYAYVNFSNAQDATNAMELLNFTPVNGKPIRIMFSQRDPSIRKSGQGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVATDNNTGLPKGYGFVQFDNEDSAQNAIKQLNGMLINDKQVYVGLFIRRQARTNGSPKFTNVYVKNFSEAFTDEDLSKLFGSYGTITSATIMKDMNGKSRCFGFVNFQNPDSAATAVERLNGTAIDDKVLYVGRAQKKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDNFSNEKLKDLFSEFGTITSCKVTVDSNGHSKGSGFVAFSTPEEASKALNEMNGKLIGRKPLYVAVAQRKEERKAHLQAHFAQIRTSGGMTPLPAGIPVYHHPGAPRLAPQQLYFGQGNPGFMPPQPAGYSFQQQILPGMRPGFAPNFITPYPLQRQAQSGHRTGVRRNGNLQPMQQSQMMIHRNSNQGFRYLPNGRNGPTMPMHFDGSGINAAPNDGQRSGALSTTLASALASATPENQRMMLGEHLYPLVERLTLNQYTAKVTGMLLEMDQSEVINLIESPEDLKTKVSEAMQVLYEATPESGVADQIGSLSVNE 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00759 637 FunFam Polyadenylate-binding protein 117 199 - -
Vian3g00759 637 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Vian3g00759 637 SMART rrm2_1 313 385 IPR003954 GO:0003676
Vian3g00759 637 SMART rrm2_1 120 193 IPR003954 GO:0003676
Vian3g00759 637 SMART rrm2_1 32 105 IPR003954 GO:0003676
Vian3g00759 637 SMART rrm2_1 210 282 IPR003954 GO:0003676
Vian3g00759 637 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 544 622 IPR002004 GO:0003723
Vian3g00759 637 SUPERFAMILY PABC (PABP) domain 496 624 IPR036053 GO:0003723
Vian3g00759 637 CDD RRM2_I_PABPs 117 193 IPR045305 -
Vian3g00759 637 SUPERFAMILY RNA-binding domain, RBD 208 393 IPR035979 GO:0003676
Vian3g00759 637 Coils Coil 281 309 - -
Vian3g00759 637 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 31 617 IPR006515 GO:0003723
Vian3g00759 637 MobiDBLite consensus disorder prediction 526 545 - -
Vian3g00759 637 SMART rrm1_1 120 193 IPR000504 GO:0003723
Vian3g00759 637 SMART rrm1_1 210 282 IPR000504 GO:0003723
Vian3g00759 637 SMART rrm1_1 32 105 IPR000504 GO:0003723
Vian3g00759 637 SMART rrm1_1 313 385 IPR000504 GO:0003723
Vian3g00759 637 PANTHER RNA BINDING PROTEIN 31 93 - -
Vian3g00759 637 Gene3D - 26 117 IPR012677 -
Vian3g00759 637 Gene3D - 118 204 IPR012677 -
Vian3g00759 637 Gene3D - 309 409 IPR012677 -
Vian3g00759 637 CDD RRM4_I_PABPs 311 389 - -
Vian3g00759 637 Gene3D - 205 308 IPR012677 -
Vian3g00759 637 Pfam Poly-adenylate binding protein, unique domain 552 617 IPR002004 GO:0003723
Vian3g00759 637 Gene3D - 543 621 - -
Vian3g00759 637 SMART poly_2 556 620 IPR002004 GO:0003723
Vian3g00759 637 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 109 IPR000504 GO:0003723
Vian3g00759 637 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 197 IPR000504 GO:0003723
Vian3g00759 637 FunFam Polyadenylate-binding protein 295 400 - -
Vian3g00759 637 FunFam Polyadenylate-binding protein 200 294 - -
Vian3g00759 637 FunFam Polyadenylate-binding protein 540 623 - -
Vian3g00759 637 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 389 IPR000504 GO:0003723
Vian3g00759 637 CDD RRM3_I_PABPs 208 287 - -
Vian3g00759 637 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 190 IPR000504 GO:0003723
Vian3g00759 637 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 279 IPR000504 GO:0003723
Vian3g00759 637 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 103 IPR000504 GO:0003723
Vian3g00759 637 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 382 IPR000504 GO:0003723
Vian3g00759 637 SUPERFAMILY RNA-binding domain, RBD 30 200 IPR035979 GO:0003676
Vian3g00759 637 FunFam Polyadenylate-binding protein 24 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00759 Vian-Chr3 7970527 7974150 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00759 1 617 Eukaryotic Initiation Factors Gene Family AT1G22760 56.075 0.0 669