LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian3g00746	ATGTTGCAGGCTCTGGTGGCGAACGAGGACTTCCAGCACATTCTCCGTGTGCTGAACACTAACGTTGATGGCAAGCAGAAGATAATGTTCGCCCTTACCTCCATCAAGGGTATTGGCAGGAGATTCGCCAACATGGTTTGCAAGAAGGCTGATGTTGACATGAACAAGAGGGCTGGTGAGTTGAGTGCTGCCGAGTTGGATAATCTGATGACAGTGGTAGCCAACCCTAGGCAATTCAAAATCCCAGACTGGTTTCTTAACAGGAAGAAGGATTACAAGGATGGCAAGTACTCCCAAGTTGTTTCCAATGCTCTCGATATGAAGCTCAGGGATGACTTGGAGAGACTCAAGAAAATCAGAAACCACCGTGGATTGAGGCACTACTGGGGCCTTAGAGTCCGTGGTCAGCACACCAAGACAACTGGCCGTAGGGGGAAGACTGTTGGTGTCTCTAAGAAGCGTTAA	465	0.4903	MLQALVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANMVCKKADVDMNKRAGELSAAELDNLMTVVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR	154

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian3g00746	154	PIRSF	RPS13p_RPS13a_RPS18e_RPS13o	5	154	IPR001892	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Vian3g00746	154	Gene3D	-	3	82	-	-
	Vian3g00746	154	FunFam	40S ribosomal protein S18	94	145	-	-
	Vian3g00746	154	FunFam	40S ribosomal protein S18	3	82	-	-
	Vian3g00746	154	Pfam	Ribosomal protein S13/S18	16	144	IPR001892	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Vian3g00746	154	Hamap	30S ribosomal protein S13 [rpsM].	14	154	IPR001892	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Vian3g00746	154	ProSitePatterns	Ribosomal protein S13 signature.	123	136	IPR018269	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Vian3g00746	154	ProSiteProfiles	Ribosomal protein S13 family profile.	17	147	IPR001892	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Vian3g00746	154	PANTHER	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	5	154	-	-
	Vian3g00746	154	Gene3D	30s ribosomal protein s13, domain 2	94	144	IPR027437	-
	Vian3g00746	154	SUPERFAMILY	S13-like H2TH domain	15	150	IPR010979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian3g00746	Vian-Chr3	7809687	7810968	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian3g00746	4	154	Cytoplasmic Ribosomal Protein Gene Family	AT4G09800	95.364	7.82e-108	302

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian3g00746	K02964		-	qsu:112019340	297.36

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian3g00746	3	7809687	7810968	Vian3g00746	3	7809687	7810968	ECH