Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00737 ATGGATCCTTTTACTGAAGAGTTGCCTCAGTACATACATATAAATCAGAATGAGTTTTTCATGCGAAGGCACAAAAAACAGAAGGAGGAGGATATTGCTATATGTGAATGCAAATATGATGCTGATGACACTGACAGTGCATGCGGGGATAGCTGCTTGAATGTTTTAACCAGCACAGAATGCACCCTTGGTTATTGCCCTTGTGATATCTTGTGCAAAAATCAGAAATTTCAGAAGTGTGAATATGCTAAAACAAAGTTGTTTAAAACTGAAGGCCGTGGATGGGGTCTTTTGGCTGATGAGGATCTTAAGGCAGGACAATTTGTCATCGAATACTGTGGAGAAGTTATATCATGGAAGGAAGCCAAACGTAGATCTCAGGCTTATGAAGATCAAGGCCTTAAAGACGCATTTATCATTTGCCTTAATGCATCTGAATCTATTGATGCAACCAGGAAAGGAAGCCTTGCTAGATTTATAAATCATTCCTGTCAACCGAATTGTGAGACGAGAAAATGGAATGTGTTGGGGGAAATAAGAGTTGGAATATTTGCAAAACATGATATTCCTATTGGAACTGAATTAGCTTATGATTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGTTGCCTATGTGGTGCACTCAAATGTTCAGGGTTCCTTGGAGCAAAATCTCGTGGTTTTCAGGAGGATACTTATCTATGGGAAGATGATGATGATAGGTACTCTGTTGAGAAAATTCCTGTATATGATTCTGCAGAGGATGAACCAGTGTCAAATGTTAATGGACGAACTGAATCCTCTTTAGATGTGATGCTTAAAGCTGAGCAACTATCTGAGTCCACTGGTTTCAATGTTCAGTCCCTTGATTCAGTTCAGATGAAAGATTTAGATGTCAAAAAGATTAAGACTGAAGTAGCAGATGAGGATATGCACTTGTACACCCACGATACTGAACAGACGCTTTCACAAAAGAATGCAATGATATCACGAATCCGAGGTAATGCTGCAGGCAGAAACTATCACATTGGACCTAGGTCCATTTCTACCAAAAGATCAAGGGCATATAATGGTGGAAGGTTTAAAAATCTCGTAGAGAAGAAAATTGATGCCAAGTTTGCTGCTGGCCTCCTAGCATCCAAGGAAGCACAAGAGGAGATTTTAAATTCTGAGAAAAGAAAGGATGATGCTACATCTACTCTTGATTCCTTATACGATGAAATACGGCCTGCTATTGAGGAACACGAGAGGGATAGCCAAGACAGTGTATCCACCACTGTCGCAGAGAAGTGGATACAGGCTTGCTGCCTAAAATTGAAGGCTGAGTTTGATCTCTACTCGTCAATTGTGAAAAATGTTGCTTGCACTGCGCAAAGGGCACCTGGACAAGCAAAACCTACTGAAGTAGATAATGAAAACGAAATTAAGTTCTTGACAGGTTGA 1446 0.4004 MDPFTEELPQYIHINQNEFFMRRHKKQKEEDIAICECKYDADDTDSACGDSCLNVLTSTECTLGYCPCDILCKNQKFQKCEYAKTKLFKTEGRGWGLLADEDLKAGQFVIEYCGEVISWKEAKRRSQAYEDQGLKDAFIICLNASESIDATRKGSLARFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSGFLGAKSRGFQEDTYLWEDDDDRYSVEKIPVYDSAEDEPVSNVNGRTESSLDVMLKAEQLSESTGFNVQSLDSVQMKDLDVKKIKTEVADEDMHLYTHDTEQTLSQKNAMISRIRGNAAGRNYHIGPRSISTKRSRAYNGGRFKNLVEKKIDAKFAAGLLASKEAQEEILNSEKRKDDATSTLDSLYDEIRPAIEEHERDSQDSVSTTVAEKWIQACCLKLKAEFDLYSSIVKNVACTAQRAPGQAKPTEVDNENEIKFLTG 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00737 481 ProSiteProfiles SET domain profile. 83 200 IPR001214 GO:0005515
Vian3g00737 481 MobiDBLite consensus disorder prediction 461 481 - -
Vian3g00737 481 ProSiteProfiles AWS domain profile. 30 81 IPR006560 GO:0005634|GO:0042054
Vian3g00737 481 ProSiteProfiles Post-SET domain profile. 207 223 IPR003616 -
Vian3g00737 481 FunFam Histone-lysine N-methyltransferase 1 235 - -
Vian3g00737 481 SMART set_7 83 206 IPR001214 GO:0005515
Vian3g00737 481 Pfam AWS domain 42 80 IPR006560 GO:0005634|GO:0042054
Vian3g00737 481 Coils Coil 381 401 - -
Vian3g00737 481 PANTHER SET DOMAIN PROTEINS 8 464 - -
Vian3g00737 481 Pfam SET domain 94 200 IPR001214 GO:0005515
Vian3g00737 481 Gene3D SET domain 3 235 IPR046341 -
Vian3g00737 481 SMART shorttest3 30 82 IPR006560 GO:0005634|GO:0042054
Vian3g00737 481 SUPERFAMILY SET domain 9 220 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00737 Vian-Chr3 7734313 7740860 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00737 65 222 C2H2 Transcription Factor Family AT2G23740 33.708 1.86e-20 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vian3g00737 SET 7.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00737 - - gmx:100804657 892.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00737 3 7734313 7740860 Vian3g00737 3 7734313 7740860 ECH