Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00733 ATGCTGCCACGTTTTATGCATGCGCCTTCTCCAGGTTTGTCTTCTTCTCCCGGGCCTCCTCTTTTGGGCTCGGGCTCGGTTGGGCAGAAAAGAACGCGTGAAGATGACACTGCTGCTGCCGCGAGTGGGGGTGAGGGTGAGGGTGGCTCGTCACGGAGTGCGTCACAGGAAGAAAGCGGCGAGAGGAGGAGGAGATACAGAGGGGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATTCGCGATCCTCACAAAGCGGCGAGAGTGTGGCTTGGCACCTTCGACACCGCCGAGGCTGCTGCCAGAGCCTACGATGAGGCCGCATTGAGGTTCAGAGGTAACAGAGCCAAACTCAACTTCCCCGAAAACGTTACCGCGGTTCGACCTCCTCACCTTCCCGATTTTCCGGCCACCTCACTCTCGGGCTCCGGTGATGTTCCAGCGGTGACTGGTTATTCTCCGACGGTGATGCAGGGGGCGCCGCTTCAGAGCTCCCCTGATTTGCTTAGAGACTATTGGGGTTATTCTCAGCTTCTGCGGAGCACAGGGGAGTTCCATGGACTCGATCAGTGGTTCTATGATTCGCAAATGGCAGCGCTTCAATCCTCTTCATCGTCGTTGTTGCCGCTACCGCCTGCGTATGCACCATCCTCTGCTTCCTTTCCTCTGTTTTCAAGCCAGCAAATGGGAGCTTTCCGGCCGCCGGGGCAACAGCATCACGGCGGAGGGGACAGTGGTAACGGGTCAGAGTTTCCACCTTCGTCATGGTCAGATACGAGTAGTTATCCTCCTCCACCTCCACCACCCGGTTGA 816 0.5833 MLPRFMHAPSPGLSSSPGPPLLGSGSVGQKRTREDDTAAAASGGEGEGGSSRSASQEESGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVTAVRPPHLPDFPATSLSGSGDVPAVTGYSPTVMQGAPLQSSPDLLRDYWGYSQLLRSTGEFHGLDQWFYDSQMAALQSSSSSLLPLPPAYAPSSASFPLFSSQQMGAFRPPGQQHHGGGDSGNGSEFPPSSWSDTSSYPPPPPPPG 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00733 271 Gene3D AP2/ERF domain 64 124 IPR036955 GO:0003700|GO:0006355
Vian3g00733 271 MobiDBLite consensus disorder prediction 1 69 - -
Vian3g00733 271 CDD AP2 73 124 IPR001471 GO:0003700|GO:0006355
Vian3g00733 271 SUPERFAMILY DNA-binding domain 65 123 IPR016177 GO:0003677
Vian3g00733 271 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
Vian3g00733 271 FunFam Ethylene-responsive transcription factor 2 64 123 - -
Vian3g00733 271 MobiDBLite consensus disorder prediction 243 258 - -
Vian3g00733 271 Pfam AP2 domain 65 114 IPR001471 GO:0003700|GO:0006355
Vian3g00733 271 MobiDBLite consensus disorder prediction 228 271 - -
Vian3g00733 271 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
Vian3g00733 271 PANTHER DNA-BINDING DOMAIN 48 164 IPR044808 GO:0003700|GO:0009873
Vian3g00733 271 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Vian3g00733 271 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00733 Vian-Chr3 7704717 7705532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00733 56 140 AP2-EREBP Transcription Factor Family AT2G33710 72.941 3.31e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian3g00733 AP2 4.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00733 - - gmx:100802242 275.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g00704 8 13797086 13798709 Vian3g00733 3 7704717 7705532 PCT