Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00717 ATGGATGCCTTGGTGGCAAATGAGGATTTCCAGCACATACTTCGTGTTTTGAACACGAACGTAGATGGGAAGCAGAAGATAATGTTCGCCCTTACCTCAATCAAAGGTATAGGGAGACGATTTGCTAACATGGCGTGTAAGAAGGCTGATGTTGACATGAACAAAAGAGCTGGGGAGCTGAGTGCCGCTGAATTGGATAACCTCATGACTGTGGTTGCCAATCCCCGGCAATTCAAGATTCCAGACTGGTTTTTAAACAGGAAGAAGGACTACAAGGATGGGAAGTATTCTCAGGTAGTGTCCAATGCGTTGGATATGAAGTTGAGGGATGACTTGGAGAGACTCAAGAAAATCAGAAACCATCGGGGGTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGCCGCAGGGGTAAAACTGTTGGTGTCTCTAAGAAGCGCTGA 462 0.474 MDALVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANMACKKADVDMNKRAGELSAAELDNLMTVVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00717 153 Gene3D - 2 81 - -
Vian3g00717 153 PIRSF RPS13p_RPS13a_RPS18e_RPS13o 5 153 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vian3g00717 153 FunFam 40S ribosomal protein S18 2 81 - -
Vian3g00717 153 ProSitePatterns Ribosomal protein S13 signature. 122 135 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vian3g00717 153 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 4 153 - -
Vian3g00717 153 Hamap 30S ribosomal protein S13 [rpsM]. 13 153 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vian3g00717 153 FunFam 40S ribosomal protein S18 93 144 - -
Vian3g00717 153 Pfam Ribosomal protein S13/S18 15 143 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vian3g00717 153 SUPERFAMILY S13-like H2TH domain 14 153 IPR010979 GO:0003676
Vian3g00717 153 ProSiteProfiles Ribosomal protein S13 family profile. 16 146 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vian3g00717 153 Gene3D 30s ribosomal protein s13, domain 2 93 143 IPR027437 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00717 Vian-Chr3 7512927 7515527 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00717 3 153 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 94.702 4.25e-107 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00717 K02964 - qsu:112019340 295.819