Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00713 ATGTCCTTCCGCAGCATAGTTCGTGATGTAAGGGATGGAGTGGGAAGCCTATCTAGGAGGAGCTTTGAGGTGAGGCTTCCTGGCCATAACAGGGGCAAGTCACGCAGTTCGGTCCACGAGTTGCAGGAGCAGCCAGCGGTTATACAGAACAGCCGGTGGGCTAGCCTTCCCCCTGAGCTCCTTCGCGATGTTATTAATAGATTGGAAGCAAGCGAGAGTACATGGCCTGCTCGTAAGCATGTCGTTGCATGTGCTGCCGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTCAGCAGTCCTGAATTCTGTGGGAAGATCACTTTCCCTGTTGCCCTGAAGCAGCCTGGGCATAGGAATGGAACCATCCAGTGTTTCATTAAGAGAGACAAATCTAAGCTGACATACCATCTCTTCCTTTGCCTCAGTCCTGCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAAAGGACCAGAAGAACAACTTGCACGGAGTATATTATATCAATGGATGCAGATAACATATCGAGATCTAGTAGTACTTACATTGGAAAACTGAGGTCAAATTTTCTTGGCACCAAGTTCATAATTTATGATACACAACCACCTTACAACAATGCTATGCTGTCTCCACCTGGGCGAAGCCGTAGGTTTTCGAAAAAGGTTTCTCCAAAGGTCCCTAGCGGCAGCTACAACATTGCCCAGGTGACGTATGAGTTGAATGTTCTTGGTACTAGGGGTCCGCGAAGGATGAATTGCACGATGTACTCCATTCCTGCATCATCCCTTGAGCCTAATGGCGTTGTCCCAGGCCAGCCAGAGCTCCTTTCTCGCCCCCTTGAGGATTCTTTCCGCAGTATATCCTTCTCAAAATCAATTGACAATTCAACAGAGTTTAGCAGCTCTAGGTTCTCAGAAATTATGGGAACCGGTAATGAAGACCAGGAGGGAAAGGTGAGACCTTTAGTTCTCAAGAACAAGTCCCCAAGGTGGCATGAACAGTTGCAATGCTGGTGTCTCAACTTTAGAGGAAGAGTCACCGTTGCCTCTGTTAAGAATTTTCAGCTGATTGCTGCTGCCCCACCAACCGCCGCCACCACGGTGCCTGTAGTAGGATCAGGACCTTCTCTATCCCAGCCAACACAGTCTTCTTCTGACCATGACAAGATTATTCTTCAGTTTGGCAAGGTTGGCAAGGATATGTTTACAATGGACTACCGATACCCCCTCTCTGCATTTCAGGCTTTTGCCATATGCTTGACTAGCTTTGACACAAAATTGGCTTGTGAATAG 1302 0.4747 MSFRSIVRDVRDGVGSLSRRSFEVRLPGHNRGKSRSSVHELQEQPAVIQNSRWASLPPELLRDVINRLEASESTWPARKHVVACAAVCKSWREMCKEIVSSPEFCGKITFPVALKQPGHRNGTIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAMLSPPGRSRRFSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMYSIPASSLEPNGVVPGQPELLSRPLEDSFRSISFSKSIDNSTEFSSSRFSEIMGTGNEDQEGKVRPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAPPTAATTVPVVGSGPSLSQPTQSSSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00713 433 Gene3D - 48 101 - -
Vian3g00713 433 ProSitePatterns Tub family signature 2. 418 433 IPR018066 -
Vian3g00713 433 Pfam F-box domain 53 100 IPR001810 GO:0005515
Vian3g00713 433 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
Vian3g00713 433 FunFam Tubby-like F-box protein 48 101 - -
Vian3g00713 433 Pfam Tub family 114 428 IPR000007 -
Vian3g00713 433 PRINTS Tubby superfamily signature 411 433 IPR000007 -
Vian3g00713 433 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Vian3g00713 433 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Vian3g00713 433 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Vian3g00713 433 PRINTS Tubby superfamily signature 390 409 IPR000007 -
Vian3g00713 433 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Vian3g00713 433 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Vian3g00713 433 Gene3D Tubby Protein; Chain A 112 427 IPR025659 -
Vian3g00713 433 SUPERFAMILY F-box domain 43 96 IPR036047 GO:0005515
Vian3g00713 433 CDD F-box_AtTLP-like 53 97 - -
Vian3g00713 433 PANTHER TUBBY-RELATED 34 431 - -
Vian3g00713 433 FunFam Tubby-like F-box protein 110 433 - -
Vian3g00713 433 SUPERFAMILY Tubby C-terminal domain-like 102 433 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00713 Vian-Chr3 7463125 7465608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00713 1 433 TUB Transcription Factor Family AT1G76900 68.845 0.0 601
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vian3g00713 Tub 3.1e-115 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00713 K19600 - gmx:100817532 799.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g00886 8 20867707 20870180 Vian3g00713 3 7463125 7465608 PCT