Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00712 ATGCAGCTTGGAGACAACACAGCCATGGAAACCTCCTCTGGTGAGGCTGTGGCGGCGCATGACGGTGGCGAGGTGATTATGATGGATGCAACTTCCGGTGAAGAGAAGGGAAAAGAGGGTGGCTTAGAAGAAGAAGAAGAAGGTGACAAGATCAACAGCTCATGTGCTGGAAACAGATGGCCCCGCCAAGAAACTTTGGCTCTCTTGAAGATAAGGTCGGATATGGATGCTGTATTTCGTGATTCAAGTCTTAAGGGTCCACTTTGGGAAGAAGTTGCAAGGAAACTAGCAGAACTGGGTTACCACCGAAGCGCGAAGAAATGTAAGGAGAAATTCGAGAATGTGTACAAGTACCACAAAAGAACCAAAGAGAGTAGAAGCGGGAAACAGGAGGGGAAAACCTACAAGTTTTTTGATCAATTACAAGCACTTGAGAACCAATTCATAGTCTCTTACCCGTTAAAACCACAACCCACTTTGACAACAACAAACACGGTTGCATTATTACCTCCGCCAACAAGGCCTAGTGATACAACAACAATCTCTTATGTCACCACCACTGTTCCCTCCATAAACCCTACAGCAATATCTCCCACACCACCTCCACCACTACCACCTACCAATGCCACCACCACAACCACCATCACTTCTCCAACAGTACAAGCCAACCCTAGAAACCCTCCGCAACCCAACAACAATAACCATGACATCCCTTACTCTTTGCCTAACATGAACAACCTCTTCTCCACCACTTCAACCTCTTCTTCCACGGCCTCTGATGAAGACTTGGAAGAGAAATACCGGAAGAAGAGAAAGTGGAAGGACTACTTCAGGAGGCTCACAAGGCAAGTCCTGGCCAAGCAAGAAGAAATGCAAAAGAGGTTCCTGGAAGCCATAGACAAAAGGGAGAGAGAGCACGTGGCACAGCAAGAGGCTTGGAGGATCCTAGAAATGGCAAGGATCAATAGAGAACACGAACTTCTTGTCCAAGAAAGATCAACCGCAGCAGCCAAAAATGCAGCAGTTATTGCTTTTTTGCAACAGTTATCTGGTCAGAACCAGAACCCCTCAACACAAGCCGGTGCCAATTTCCTTCAAACACCGCCTTCACAACCACCACCTCCACCCCAAGTATCACAAGTGAAACCACCACCGCAACCACAGACACCATTGGTGATGTCAAATAATAACAATATTGAAATTCAGAAAATGAATAATGGTCACAGTACAGTTGCTGCAACTCCTACTACTGCTGCTACTGCTATTTGCGTTGTTTCTACCGCTCCTACTTCTTTGAATTCTTTATCTTCTTCTAGGTGGCCGAAAGCAGAAGTTCATGCCTTGATAAGGCTGAGGACGAGTCTTGAAACCAAGTACCAAGAAAATGGACCAAAGGCTCCACTATGGGAGGACATATCAGCAGGAATGTTGAGGCTCGGGTACAACAGGAGTGCGAAGAGATGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAAAGCAGCAAGCACAGGCGAGAGAATAGTAAGACATGTCCCTATTTTCAGGAACTGGATGCCATATACAAAGAAAAGAGCAAAAGTCAGAACCCCTTTGGCGTTTCATTCCTGAACATGAAGCCACATGAGATGATGGAGCCCTTGATGGTGCAACCGGAGCAGCAGTGGAGACCTCCCTCGCAATACGAGCAAGGTGGAGTGAAGGAGAACAGTGAAAGTGAATACGAAAGAAAAGAGAGAGAGGAGGAAGAGGAAGATGATGATGAAGAAGTAGAAGAGAATGAGAACGAAGAGGGAGATCTAGAGAGTGTGGAAGACGAAGGAGGGAGCCGTTATGAGATTGCGACAAATAAACTTTCTTCAGTGGACACAGTTGAATGA 1893 0.4617 MQLGDNTAMETSSGEAVAAHDGGEVIMMDATSGEEKGKEGGLEEEEEGDKINSSCAGNRWPRQETLALLKIRSDMDAVFRDSSLKGPLWEEVARKLAELGYHRSAKKCKEKFENVYKYHKRTKESRSGKQEGKTYKFFDQLQALENQFIVSYPLKPQPTLTTTNTVALLPPPTRPSDTTTISYVTTTVPSINPTAISPTPPPPLPPTNATTTTTITSPTVQANPRNPPQPNNNNHDIPYSLPNMNNLFSTTSTSSSTASDEDLEEKYRKKRKWKDYFRRLTRQVLAKQEEMQKRFLEAIDKREREHVAQQEAWRILEMARINREHELLVQERSTAAAKNAAVIAFLQQLSGQNQNPSTQAGANFLQTPPSQPPPPPQVSQVKPPPQPQTPLVMSNNNNIEIQKMNNGHSTVAATPTTAATAICVVSTAPTSLNSLSSSRWPKAEVHALIRLRTSLETKYQENGPKAPLWEDISAGMLRLGYNRSAKRCKEKWENINKYFKKVKESSKHRRENSKTCPYFQELDAIYKEKSKSQNPFGVSFLNMKPHEMMEPLMVQPEQQWRPPSQYEQGGVKENSESEYERKEREEEEEDDDEEVEENENEEGDLESVEDEGGSRYEIATNKLSSVDTVE 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00712 630 Coils Coil 626 630 - -
Vian3g00712 630 FunFam Trihelix transcription factor GT-2 60 121 - -
Vian3g00712 630 MobiDBLite consensus disorder prediction 194 208 - -
Vian3g00712 630 ProSiteProfiles Myb-like domain profile. 432 496 IPR001005 -
Vian3g00712 630 MobiDBLite consensus disorder prediction 353 390 - -
Vian3g00712 630 CDD GT1 438 503 - -
Vian3g00712 630 SMART sant 436 498 IPR001005 -
Vian3g00712 630 SMART sant 56 118 IPR001005 -
Vian3g00712 630 FunFam Trihelix transcription factor GT-2 440 501 - -
Vian3g00712 630 MobiDBLite consensus disorder prediction 192 267 - -
Vian3g00712 630 Coils Coil 572 611 - -
Vian3g00712 630 MobiDBLite consensus disorder prediction 367 390 - -
Vian3g00712 630 MobiDBLite consensus disorder prediction 582 608 - -
Vian3g00712 630 CDD GT1 58 123 - -
Vian3g00712 630 MobiDBLite consensus disorder prediction 558 572 - -
Vian3g00712 630 MobiDBLite consensus disorder prediction 31 52 - -
Vian3g00712 630 Pfam Myb/SANT-like DNA-binding domain 58 144 IPR044822 -
Vian3g00712 630 Pfam Myb/SANT-like DNA-binding domain 438 525 IPR044822 -
Vian3g00712 630 ProSiteProfiles Myb-like domain profile. 52 116 IPR001005 -
Vian3g00712 630 MobiDBLite consensus disorder prediction 209 258 - -
Vian3g00712 630 PANTHER FI21293P1 32 585 - -
Vian3g00712 630 MobiDBLite consensus disorder prediction 557 630 - -
Vian3g00712 630 MobiDBLite consensus disorder prediction 1 57 - -
Vian3g00712 630 Gene3D - 440 501 - -
Vian3g00712 630 Gene3D - 60 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00712 Vian-Chr3 7442835 7445560 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00712 53 559 Trihelix Transcription Factor Family AT1G76890 46.255 2.62e-132 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vian3g00712 Myb_DNA-bind_4 1e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00712 - - gsj:114370603 855.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g00887 8 21167718 21170270 Vian3g00712 3 7442835 7445560 PCT