Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00711 ATGGCAGAGCTTGGGTATCACAGAAGTTCCAAGAAGTGCAAAGAGAAATTCGAGAACGTGTACAAGTACCACAAAAGAACCAAAGAAGGTCGAAGTGGGAAGCAAGATGGAAAAACATATCGTTTCTTTGATCAACTACAAGCCCTTGAGAATCACACTCCAACACCCCACTCTCCCAAACCATCACCTAAACTACCACAATCAGCACCATCAAGAGTCATTGCAGCAACAGCTGCATCGTTGTCACTACCAATTGCAACAGCATCAACAACTGCTTCATCCTTGTCACTTCCAATTCCAACCACAATAACAACAGTACCAATGCAGCCAATACTGTCCAACACCACTCTCACTAGTACTGTCCCCCATATCACTGTTCCATCAACAACAACACTCCCTATAACCATACCCCAGCCCATGCTCACTACCCCATCAATACATCTCTCAACTCCTTCTTACCCTCCAACAAACCCTACCACCAACACAGCCCCACCACCTTCTTTCCCCACGCTCCCCACCGACACCTTCTCCAATTCTAGCTCCTCCTCCACCTCCTCCGACGAAACATTGGAAGGTAGGCGCAAAAGGAAGCGCAAGTGGAAGGACTTCTTCGAGAGACTAATGAAGGAAGTGATCCAGAAACAAGAGGATCTACAAAAGAAGTTCCTCGAAGCCATAGAGAAACGAGAACACGAAAGAATAGCAAGAGAAGAAGCATGGAGAGTCCAAGAGATGCAAAGAATCAATAGAGAAAGAGAAATCCTCGCCCAGGAAAGATCCATAGCCGCAGCCAAAGACGCTGCCGTCATGTCATTCCTTCAAAAAGTAGCCGAACAACAAAACCTCGGTCAAGCATTAAACAGCATCAACCTCGTACAACAACCACCAACGCAACAACCTCAACCACCACTGCAACAATTGCCACCATCTAGTGTAGCTCCATCTGCTTTGCAACAACCACTGCCCGCGGTTGTTTCACAACCATTGGTGTTTCCAGTGGTCTCACATGTGACCAACATGGAGATAGTGAAAGTTGACAACAACAACAACAATAATAGTAGTGAGAATTTCACGCCATCGAGTTCCTCGAGGTGGCCAAAGGTGGAGGTTCAGGCATTGATAAAGCTTCGAACGAACCTGGATGCAAAGTATCAGGAGAACGGACCAAAGGGTCCTCTATGGGAGGAGATCTCATCCTCGATGAGGAAGCTCGGGTACAACCGAAACGCGAAAAGGTGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAAAGCAACAAGCGGAGACCGGAAGATTCGAAAACATGCCCTTATTTCCACCAGCTGGACGCGCTGTACAGGGAGAAGAGCAAGGTGGAGGGCGTGGCGGCGGCGGTGAAGCCGGAAAGCACGGTGGCGCCGCTGATGGTGCGGCCGGAGCAGCAATGGCCACCTCAGGAGGAAACGATGAGAGATAGGGACATCAGAATGGAGGACGTGGAGAACGAAGATGATGAGTACGAGGAAGAGAGAGAGGGAGAGGAAGAAGAAGATGACGAAGAGGATGAAGAAGGTGGTGGTGATGGGAAATATGAGATAGTGGCGAACAAAACGAGTGGTGGTTCAGTTGCGGCATCGACAGAATAG 1641 0.4857 MAELGYHRSSKKCKEKFENVYKYHKRTKEGRSGKQDGKTYRFFDQLQALENHTPTPHSPKPSPKLPQSAPSRVIAATAASLSLPIATASTTASSLSLPIPTTITTVPMQPILSNTTLTSTVPHITVPSTTTLPITIPQPMLTTPSIHLSTPSYPPTNPTTNTAPPPSFPTLPTDTFSNSSSSSTSSDETLEGRRKRKRKWKDFFERLMKEVIQKQEDLQKKFLEAIEKREHERIAREEAWRVQEMQRINREREILAQERSIAAAKDAAVMSFLQKVAEQQNLGQALNSINLVQQPPTQQPQPPLQQLPPSSVAPSALQQPLPAVVSQPLVFPVVSHVTNMEIVKVDNNNNNNSSENFTPSSSSRWPKVEVQALIKLRTNLDAKYQENGPKGPLWEEISSSMRKLGYNRNAKRCKEKWENINKYFKKVKESNKRRPEDSKTCPYFHQLDALYREKSKVEGVAAAVKPESTVAPLMVRPEQQWPPQEETMRDRDIRMEDVENEDDEYEEEREGEEEEDDEEDEEGGGDGKYEIVANKTSGGSVAASTE 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00711 546 SMART sant 361 423 IPR001005 -
Vian3g00711 546 FunFam Trihelix transcription factor GT-2 365 426 - -
Vian3g00711 546 MobiDBLite consensus disorder prediction 172 187 - -
Vian3g00711 546 Pfam Myb/SANT-like DNA-binding domain 1 49 IPR044822 -
Vian3g00711 546 Pfam Myb/SANT-like DNA-binding domain 363 450 IPR044822 -
Vian3g00711 546 CDD GT1 363 428 - -
Vian3g00711 546 MobiDBLite consensus disorder prediction 157 171 - -
Vian3g00711 546 MobiDBLite consensus disorder prediction 24 71 - -
Vian3g00711 546 ProSiteProfiles Myb-like domain profile. 363 421 IPR001005 -
Vian3g00711 546 Coils Coil 488 522 - -
Vian3g00711 546 MobiDBLite consensus disorder prediction 497 525 - -
Vian3g00711 546 Gene3D - 365 426 - -
Vian3g00711 546 Gene3D - 1 26 - -
Vian3g00711 546 MobiDBLite consensus disorder prediction 473 546 - -
Vian3g00711 546 MobiDBLite consensus disorder prediction 293 315 - -
Vian3g00711 546 Coils Coil 201 221 - -
Vian3g00711 546 MobiDBLite consensus disorder prediction 24 38 - -
Vian3g00711 546 PANTHER FI21293P1 1 503 - -
Vian3g00711 546 MobiDBLite consensus disorder prediction 143 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00711 Vian-Chr3 7421611 7423251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00711 1 481 Trihelix Transcription Factor Family AT1G76880 50.591 5.39e-132 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vian3g00711 Myb_DNA-bind_4 1.7e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00711 - - pvu:PHAVU_007G079700g 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g00888 8 21250246 21254078 Vian3g00711 3 7421611 7423251 PCT