Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00706 ATGGGGAGGAAGAAGCCGACTGCGAGAGACGAGGAGAACGCGTCGCAGCAAGGCGGTGGCGGGAAATCTAAGAAGAAGGCCGTGGTCATCGACGACGATGAGTATTCCATTGGAACAGAGCTCTCCGAGGAGCCGGCGCTGGAAGAGAAACCCGCTGCGGCGGGAAAGAAGAAAAGTAAGAAAGGCAATGCTAAAAGTAAGAGTAATGATGATGATGTTGATGATGACGAAGATGTGCCTGAAGTTGTGTTTGCTGGGAAGAAGAAGGGGAAAAATAAGAAAGGCGGTGGGAGCAGTGCGTTTACTCCATCTGGCTTTAGTTTGCTTGGTGATGAGGAAGGTGACGAAGAAGAAAAGTCTGAAGAGGATGGACCTGCGGTAAGTTTTTCGGGTAAGAAGGCATCGAACAAAGGAGATGGTAGTCTGTTCAATGCATCAGCTTTTGATGCTATCGACGATGATGCTGGTGGTGAGGAGGAGGAGGAGGAGGAGGAGGATGAGCCGGTGGTTAGCTTTACTGGAAAGAAAAAGTCCTCGAAGGTTTCGAAGAAAAGCGGTGGAAGTTTGTTCGCTGCCTCGGCTTTTGATGCCATTGATGATGGTGGGGATGGTGAGGTGGCAGATGATAAGAACAATGATTTTGATGACGATGAACCTGTTATTACTTTCACGGGGAAGAAGAAGTCTTCGAAAGGCAGTAAAAAGGGTGGTGCTGTGTTTTCTGCCTCTGTTCTCACTGAAATCGACGATGAAGAGGAGAAGGAGGATGGTGGTGGTGATGATGACGATGAAATTGGACCAATTACTTTCTCTGGCAAGAAGAAGAAGTCTTCCAAGAAAGCTGCAAGTTCCGGTGGCAAAGCTGTTTCTGTTGAGGATGATGTTTCTGTACCCGAGTCTGGTAAGGATGGTGATGACATGGATGAGGATGATGTTTCTTTAGTTTCGTTTTCAGGTAAAAAGAAGTCCTCTAAAAAGAAGGGCAGTAGCACTGCTGCCAAAGGGAGTGAGGAAAATGTGGATGTAGTTGAGCCTGAGGCACCCACTATTGGTAGTGCTGATGCTAGCAACAGCAATGTAAATAAGAGTGAAGGAGTTGCTGAAACTTCCAAAAATAAGAAGAAGAATAAGAAAAAGAGTGGAAGAACTGCTCAAGAGGAGGAAGATTTGGATAAGCTTCTTGCAGAGCTCGGTGAGGCTCCTATGCCAAAACCAACTGCTTCTGCACCACAGGATGATAAAGTTCAGCCTACTCCTGAAGTAGGTCCTGCTGCTGCTGATGCTTCTGGGGAAAAGGAGGGTGAAGAGGAGGTGGTAGAATCAGCTGCTGCAAAGAAGAAGAAGAAGAAAAAGGAAAAGGAAAAGGAGAAGAAGGCAGCTGCCGCTGCCGCAGCAGCAGCAGGAAGTGCACCAGAAAAAGAATTAGCTGAAGTTAAAGCTGAGGCAATTGAACCAAAGAAGAATGACTCAAAGGCTAAGGCAGCTGATAAGAAAGTGCCAAAGCATGTTAGAGAGATGCAAGAGGCACTAGCTCGAAGAAAAGAGGCTGAAGAAAAGAAGAAACGAGAAGAGGAAGAGAGGTTAAAGAAGGAAGAAGAGGAGCGACGCGGGCAAGAGGAACTTGAGAGACAGGCAGAAGAAGCTAAACGCAGAAAGAAGGAAAGAGAAAAGGAAAAACTCCTGAAAAAAAAGCAAGAAGGTAAATTATTAACTGGTAAGCAGAAAGAAGAAGCACGTCGTTTGGAGGCAATGAGGAGGCAGATTCTCAATAGCACTGGGGGTCTGACTCTCCCTTCTGGGGACTCTGGTGCTCCAGCTAAAAAACCCATATACCAGACAAAGAAGGCAAAACCAAATAATAGAAATCAGAATGGTGCTGCTGCTCAGGCAGCTGAAATTGTCGAAGCGAAGGAGACTGCTACTGATGTAGTTTCTGAGGAACCAGTAAATATTGAAGAAGTGGAGTCGATTCAGGTGGATGACAAAGTTGAACTTCCTGTCACTGCTGAAGATGATGTGGTGGAAGATGATGAAGATGATGAATGGGATGCAAAAAGCTGGGATGATGTTAATCTGAATGCCAAAGGTGCATTTGCAGACGAAGAGGCTGACTCCGAACCTAAACCTGTTATCAAAAAGGAGATTAAAAATGCCATGCCAACTCAGAATGCCGGGGCTGCTAGTGCAACTGTTTCTGGGCCTGTGACTGATGAAACTGAAAATGGAAAGCAAGCTAATGCTGTGGTTACAGACAGAAATAAGAAGCATGATTCTGACTTGAATAGGTCAAAAAAATCTGCTGCCCCTCCTCAGCCTAATGATGAAAACCTCCGCTCCCCAATTTGCTGTATCATGGGGCACGTGGATACTGGGAAGACCAAGCTGTTGGATTGTATTCGAGGTACTAATGTTCAGGAGGGTGAGGCTGGAGGTATCACACAACAGATTGGTGCAACATACTTTCCTGCTGAGAACATACGTGAAAGAACAAAGGAACTGAAAGCTGATGCCAAGCTGAAAGTTCCTGGTCTACTGGTTATTGACACCCCTGGGCACGAGTCATTTACTAACTTGAGGTCTCGGGGTTCAGGCCTATGTGATATTGCAATTTTGGTTGTTGACATTATGCATGGGTTAGAGCAACAAACAATAGAGTCACTAAATCTATTAAAAATGAGGAATACAGAATTCATTGTTGCCTTAAATAAGGTTGACAGGCTTTATGGATGGAAAACATGTCGCAATTCCCCAATTGTCAAAGCACTGAAGCAGCAGACTAAGGATGTTCAAAATGAGTTCAATATGAGGCTCACTCAGATTGTTACTCAATTCAAAGAACAAGGGATGAATACTGAGTTGTACTATAAAAACAAAGAAATGGGAGAAACATTCAGTATTGTGCCTACAAGTGCAATAAGTGGCGAAGGAATTCCCGATTTGTTATTACTTTTGGTTCAATGGACCCAAAAGACAATGGTTGAGAAACTTACATACAGTGAAGAAGTGCAGTGTACTGTTTTAGAGGTTAAGGTTGTTGAAGGCCATGGAACTACTATTGATGTTGTTTTAGTTAATGGTGTCCTTCATGAAGGAGAACAAATAGTTGTCTGCGGAATGCAGGGCCCAATTGTTACCACAATTCGAGCTTTATTGACTCCTCATCCAATGAAGGAACTTCGTGTCAAGGGAACATATGTTCATCACAAAGAAATCAAAGCTGCAATGGGTATAAAAATCACTGCCCAGGGCCTTGAGCATGCCATTGCTGGCACTGGTTTATATGTGGTGAAGCCTGATGATGATTTGGAAGATATCAAAGAAGCAGCAATGGAAGATATGCGATCAGTTATGAGCAGGATTGACAGGACTGGTGAAGGTGTTTGTGTACAGGCTTCTACCCTTGGTTCCTTAGAAGCATTACTGGAGTTTTTGAAAACTCCAGAAGTTAGTATCCCTGTTAGTGGTATAAGCATTGGTCCTGTTCACAAAAAAGATGTAATGAAGGCCAGCGTAATGCTTGAAAAAAAGCGAGAGTATGCAGCTATATTGGCATTTGATGTCAAAGTTACACCTGAGGCTAGGGAACTGGCAGATGAATTAGGTGTGAAGATATTTATTGCTGATATCATTTATCATCTGTTTGATCAATTTAAAGCGTATATTGACAACATTAAAGAGGAGAAAAAGAAAGAAGCTGCTGATGAGGCAGTCTTCCCATGCGTTTTTAAAATCTTACCAAATTGCATTTTCAACAAGAAGGACCCAATTGTTTTGGGAGTTGATATTCTTGAAGGCATTGCAAAGATTGGGACTCCAATTTGCATTCCTTCCAGAGAGTTCATTGATATTGGTCGCATTGCCTCCATTGAAAATAACCACAAACCTGTTGAATATGCCAAGAAGGGGCAGAAAGTAGCCATTAAGATTGTTGGCAGCAATCCTGAAGAGCAACAAAAAATGTTTGGGAGACATTTTGAGATCGACGATGAACTTGTAAGCCATATTTCACGGAGATCTATTGATATTCTCAAAACTAATTATCGGGATGATCTATCCATGGAGGAATGGAGGTTGGTTGTGAAATTGAAGAATCTTTTCAAGATACAATGA 4110 0.4333 MGRKKPTARDEENASQQGGGGKSKKKAVVIDDDEYSIGTELSEEPALEEKPAAAGKKKSKKGNAKSKSNDDDVDDDEDVPEVVFAGKKKGKNKKGGGSSAFTPSGFSLLGDEEGDEEEKSEEDGPAVSFSGKKASNKGDGSLFNASAFDAIDDDAGGEEEEEEEEDEPVVSFTGKKKSSKVSKKSGGSLFAASAFDAIDDGGDGEVADDKNNDFDDDEPVITFTGKKKSSKGSKKGGAVFSASVLTEIDDEEEKEDGGGDDDDEIGPITFSGKKKKSSKKAASSGGKAVSVEDDVSVPESGKDGDDMDEDDVSLVSFSGKKKSSKKKGSSTAAKGSEENVDVVEPEAPTIGSADASNSNVNKSEGVAETSKNKKKNKKKSGRTAQEEEDLDKLLAELGEAPMPKPTASAPQDDKVQPTPEVGPAAADASGEKEGEEEVVESAAAKKKKKKKEKEKEKKAAAAAAAAAGSAPEKELAEVKAEAIEPKKNDSKAKAADKKVPKHVREMQEALARRKEAEEKKKREEEERLKKEEEERRGQEELERQAEEAKRRKKEREKEKLLKKKQEGKLLTGKQKEEARRLEAMRRQILNSTGGLTLPSGDSGAPAKKPIYQTKKAKPNNRNQNGAAAQAAEIVEAKETATDVVSEEPVNIEEVESIQVDDKVELPVTAEDDVVEDDEDDEWDAKSWDDVNLNAKGAFADEEADSEPKPVIKKEIKNAMPTQNAGAASATVSGPVTDETENGKQANAVVTDRNKKHDSDLNRSKKSAAPPQPNDENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEQQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNSPIVKALKQQTKDVQNEFNMRLTQIVTQFKEQGMNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTYSEEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGEQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYVHHKEIKAAMGIKITAQGLEHAIAGTGLYVVKPDDDLEDIKEAAMEDMRSVMSRIDRTGEGVCVQASTLGSLEALLEFLKTPEVSIPVSGISIGPVHKKDVMKASVMLEKKREYAAILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNIKEEKKKEAADEAVFPCVFKILPNCIFNKKDPIVLGVDILEGIAKIGTPICIPSREFIDIGRIASIENNHKPVEYAKKGQKVAIKIVGSNPEEQQKMFGRHFEIDDELVSHISRRSIDILKTNYRDDLSMEEWRLVVKLKNLFKIQ 1369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00706 1369 Gene3D - 1121 1225 IPR036925 -
Vian3g00706 1369 CDD IF2_aeIF5B_IV 1240 1335 - -
Vian3g00706 1369 MobiDBLite consensus disorder prediction 749 763 - -
Vian3g00706 1369 Coils Coil 499 566 - -
Vian3g00706 1369 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1102 1231 IPR036925 -
Vian3g00706 1369 Gene3D Translation factors 1000 1120 - -
Vian3g00706 1369 Gene3D - 771 999 IPR027417 -
Vian3g00706 1369 MobiDBLite consensus disorder prediction 1 629 - -
Vian3g00706 1369 Gene3D Translation factors 1232 1369 - -
Vian3g00706 1369 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 777 993 IPR000795 GO:0003924|GO:0005525
Vian3g00706 1369 Pfam Elongation factor Tu domain 2 1016 1091 IPR004161 GO:0005525
Vian3g00706 1369 FunFam Eukaryotic translation initiation factor 5B 1232 1369 - -
Vian3g00706 1369 MobiDBLite consensus disorder prediction 670 685 - -
Vian3g00706 1369 MobiDBLite consensus disorder prediction 474 584 - -
Vian3g00706 1369 FunFam eukaryotic translation initiation factor 5B 1000 1119 - -
Vian3g00706 1369 FunFam Eukaryotic translation initiation factor 5B 771 999 - -
Vian3g00706 1369 SUPERFAMILY Translation proteins 1236 1368 IPR009000 -
Vian3g00706 1369 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 777 1068 IPR027417 -
Vian3g00706 1369 FunFam Eukaryotic translation initiation factor 5B 1119 1225 - -
Vian3g00706 1369 MobiDBLite consensus disorder prediction 661 688 - -
Vian3g00706 1369 NCBIfam small GTP-binding protein domain 782 908 IPR005225 GO:0005525
Vian3g00706 1369 MobiDBLite consensus disorder prediction 246 263 - -
Vian3g00706 1369 Pfam Elongation factor Tu GTP binding domain 781 989 IPR000795 GO:0003924|GO:0005525
Vian3g00706 1369 Pfam Translation-initiation factor 2 1106 1218 IPR023115 -
Vian3g00706 1369 Coils Coil 432 464 - -
Vian3g00706 1369 CDD aeIF5B_II 1001 1111 - -
Vian3g00706 1369 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 479 1366 IPR015760 -
Vian3g00706 1369 MobiDBLite consensus disorder prediction 152 168 - -
Vian3g00706 1369 MobiDBLite consensus disorder prediction 351 366 - -
Vian3g00706 1369 MobiDBLite consensus disorder prediction 429 447 - -
Vian3g00706 1369 CDD IF2_eIF5B 780 990 - -
Vian3g00706 1369 MobiDBLite consensus disorder prediction 717 776 - -
Vian3g00706 1369 MobiDBLite consensus disorder prediction 721 748 - -
Vian3g00706 1369 PRINTS GTP-binding elongation factor signature 845 855 IPR000795 GO:0003924|GO:0005525
Vian3g00706 1369 PRINTS GTP-binding elongation factor signature 897 906 IPR000795 GO:0003924|GO:0005525
Vian3g00706 1369 PRINTS GTP-binding elongation factor signature 861 872 IPR000795 GO:0003924|GO:0005525
Vian3g00706 1369 PRINTS GTP-binding elongation factor signature 781 794 IPR000795 GO:0003924|GO:0005525
Vian3g00706 1369 MobiDBLite consensus disorder prediction 380 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00706 Vian-Chr3 7351782 7359152 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00706 1 41 Eukaryotic Initiation Factors Gene Family AT1G76810 65.217 6.74e-06 48.9