Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00672 ATGGATGAGGACTGGGATCTCTTTGCCATCGTCAGAAGCTGCCAATCAGCTACCAATACTTCCACCGCAGCAATTCCAGAAACCACCACCAATACTACTTCATCTTCTCTCTTCACTTCCTTTCTCAAGGAAGACAGATACGATGCATTTTCCTTTCCCAATACAGTCCAACCCATACCAAATGAGTTTCACCAGCTACACCAATTCTTTTCACCCTTTAACCCCACCACCACCAACGCCACTACCCTCAGTGCTCCTCGCATCAATCCTAATTCCCCTTATTTTGCCCAACAGGAAAGCCAGCAAATTAGTGACCACCTTCCCACTTTGCCTCATTTTTTGCCAGAACCCTCCACTCCCAGTTTTAATAGATTCCCTGACCATCAACAACAGCAACAGAATCAACTACAGTTACTTCAGAAACAGGAATTTCATACACCCCAGAACAATTCACCCACAGTTTCACCAAACGCACAACCTCAAACACCCAAATCAAGAAAAAGAAAAAGCCAACAGAAGAAAATGGTGTGTCAGGTAACCGCAGATAAACTCTCAGCAGATTTGTGGGCGTGGCGAAAATACGGACAAAAACCAATTAAGGGTTCTCCGTATCCAAGGAATTACTATAGGTGTAGCAGCTCCAAAGGTTGTATGGCTCGAAAACAAGTTGAACGGAGTAACACTGAAACCGATGTGTTCATCGTTACGTACACCGGAGACCACTCGCATCCCCGGCCAACCCACCGGAACTCCCTCGCCGGAAGTACCCGAAGTAAAAATCCGACAACGAATCCGCCGGCTTTACACGGGTCACTCTCCTTCCAAGCCGCCCCCTTTTCTTCTTCTTCTTCTTCTCCACCACTCTCTCCAACGTCGCCGTCGGAAGATCCACCAGAAGCCGGCGATGTTGAACCTGACCAGGACATGGAAACCGACATGGACGATGACGGTGACATCCGATGA 963 0.4787 MDEDWDLFAIVRSCQSATNTSTAAIPETTTNTTSSSLFTSFLKEDRYDAFSFPNTVQPIPNEFHQLHQFFSPFNPTTTNATTLSAPRINPNSPYFAQQESQQISDHLPTLPHFLPEPSTPSFNRFPDHQQQQQNQLQLLQKQEFHTPQNNSPTVSPNAQPQTPKSRKRKSQQKKMVCQVTADKLSADLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCMARKQVERSNTETDVFIVTYTGDHSHPRPTHRNSLAGSTRSKNPTTNPPALHGSLSFQAAPFSSSSSSPPLSPTSPSEDPPEAGDVEPDQDMETDMDDDGDIR 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00672 320 MobiDBLite consensus disorder prediction 78 107 - -
Vian3g00672 320 Gene3D WRKY domain 168 239 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian3g00672 320 SUPERFAMILY WRKY DNA-binding domain 182 246 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian3g00672 320 MobiDBLite consensus disorder prediction 236 320 - -
Vian3g00672 320 MobiDBLite consensus disorder prediction 299 320 - -
Vian3g00672 320 MobiDBLite consensus disorder prediction 78 175 - -
Vian3g00672 320 FunFam WRKY transcription factor 22 168 239 - -
Vian3g00672 320 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 310 IPR044810 GO:0003700
Vian3g00672 320 MobiDBLite consensus disorder prediction 248 289 - -
Vian3g00672 320 MobiDBLite consensus disorder prediction 122 165 - -
Vian3g00672 320 SMART WRKY_cls 185 245 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian3g00672 320 ProSiteProfiles WRKY domain profile. 180 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian3g00672 320 Pfam WRKY DNA -binding domain 187 244 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00672 Vian-Chr3 6802957 6804139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00672 164 309 WRKY Transcription Factor Family AT5G52830 60.544 1.41e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian3g00672 WRKY 9.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00672 - - gmx:100792164 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g00993 8 26471242 26472716 Vian3g00672 3 6802957 6804139 ECH
Vian9g00621 9 7537144 7543473 Vian3g00672 3 6802957 6804139 ECH
Vian2g00567 2 6873673 6875255 Vian3g00672 3 6802957 6804139 ECH
Vian9g00197 9 1613103 1617973 Vian3g00672 3 6802957 6804139 ECH
Vian3g00672 3 6802957 6804139 Vian3g00672 3 6802957 6804139 ECH
Vian8g00993 8 26471242 26472716 Vian3g00672 3 6802957 6804139 PCT