Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00659 ATGTCGCCGCCGGGGTTCCCTGCTGCTGGACCCTCCGATTTCTACGGCGGAGCAACCGGATTCCCTACTCAATCCATGGCAGTTACACCCACCATCGACAACCACTCCGCCACAACTCACCACCCTCTCTACCGATCCCAACCTTCAATTATGCTTCATCCCTCCTCCAACATACCCAAACACCAAACATCCTCTCTCATCGGGAAACGCACCCTCGCAGAATTCCAGACCCACAACCTCACTAACACCATCAGCAACAACCTTCTTGTTAGCAACAACAATAACCAACTCCTTACCAACTATCAATTTCGTTCCGTAAAGCCCAGAACTTTTCAACACAACCAATTCCCCACGTTCTCTCCTGAATTAGCTGCCTTACCGTCACACCGTTACGGCGCCTCTCTTCTCCACCACATTCGCCCTAACGCTCTTAACCCACAACCTGTCACGAGTTCGATCCTGTCTCACACAAATTTCTCTCCAGTTCAAAGCAGGCTAACCGCGACCCTTGAATCAGAGAAGAACTTCATAGACCACCGCCTCCAGGAGTTGGAAAAAGAACTTCTAGAAGACAATGATGATGACCAAAGCGACGCCGTTTCAGTCGTTACCACCTCTGAATGGTCACACACAATACAGAACTTAATCACTCCGCCCAAACGTGCCTCGTCATCACCATCTTCCTCTACCACTACCACGTCGTCCAACTCCTCCGTAGAATCCATCAATGTCATACAGTCCCTAACGGAGGTCGCGAAAGCGATTTCAGAAGAGAGATTCGAGGTCGCCACGCAGATCCGATTCTCGCAGAATTCGGATCAACGCTTCGTAAATTGCATGGTTTCCGCACTCAAGTCGCGAATGAGTCACGCTGAGTATCCACCACCTGTTGAGGAATTGTTCGGCAGGGAACACGCCGAGTCCACTCAGTTGCTATTTGAACACTCGCTCTTCTTTAGGGTGGCGCTCATGGTAGCCAACATCGCAATCCTCGAATCTGCATTCGACGATAAAACACAGAACCCCAAACTATGCGTGGTGGATTTCGACATCGGGAACGGGAAACAATATGCCAGCCTTCTCCACGAGCTCTCTTTGCGGCGAAAGGGCTATCCGGCCGTCGTCAAGATCATCGCCGTTACGGAGAACAGCGCTGACGAGAGGATGAGTTCCGCGGGCGTGATGCTCGGAAGACTCGCAGAGCAACTCGGGATTGGTTTCGAATTCAAAGTGCTGACTCAGAGAATCGCCGAGTTAACTCGCGAGTCTTTGGGTTGCGAAGCGGATGAGGCGCTGGCGGTGAACTTCGCATTCAGGCTTTACAAAATACCCGACGAGAGTGTCTCCACGGAGAACCCGCGCGACGAACTTTTGCGGCGCGTGAAGGCACTCGCGCCGCGAGTGGTGACGCTGGTGGAGCAGGAATCAAACACCAATACGGCGCCCTTCGTGGCTCGCGTGGCCGAGTCGTGCGCGTATTACGGCGCGCTGTTTGACTCGCTCGAGACTACGATGACACGGGAAAACTCGTGGCGAATAAAAATGGAGGAGGGACTGAGTCGGAAGATAGCGAACACGGTGGCATGCGAAGGAAGGGAGCGCGTGGAAAGGTGCGAGGTGTTTGGAAAGTGGCGCGCGCGCATGGACATGGCTGGTTTCAGGTTGAAACCACTGAGTCAGAGAGTCGCTGAGTCAATCAAAGAACGACTCGGTGGTGAGAACCGGGTGACAGTAAAAGTAGAAAAGGGTGGGATTTGCTTTGGGTGGATGGGAAGAACCCTGACCGTGGCTTCTGCTTGGTGTTAA 1806 0.5293 MSPPGFPAAGPSDFYGGATGFPTQSMAVTPTIDNHSATTHHPLYRSQPSIMLHPSSNIPKHQTSSLIGKRTLAEFQTHNLTNTISNNLLVSNNNNQLLTNYQFRSVKPRTFQHNQFPTFSPELAALPSHRYGASLLHHIRPNALNPQPVTSSILSHTNFSPVQSRLTATLESEKNFIDHRLQELEKELLEDNDDDQSDAVSVVTTSEWSHTIQNLITPPKRASSSPSSSTTTTSSNSSVESINVIQSLTEVAKAISEERFEVATQIRFSQNSDQRFVNCMVSALKSRMSHAEYPPPVEELFGREHAESTQLLFEHSLFFRVALMVANIAILESAFDDKTQNPKLCVVDFDIGNGKQYASLLHELSLRRKGYPAVVKIIAVTENSADERMSSAGVMLGRLAEQLGIGFEFKVLTQRIAELTRESLGCEADEALAVNFAFRLYKIPDESVSTENPRDELLRRVKALAPRVVTLVEQESNTNTAPFVARVAESCAYYGALFDSLETTMTRENSWRIKMEEGLSRKIANTVACEGRERVERCEVFGKWRARMDMAGFRLKPLSQRVAESIKERLGGENRVTVKVEKGGICFGWMGRTLTVASAWC 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00659 601 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 243 594 IPR005202 -
Vian3g00659 601 MobiDBLite consensus disorder prediction 213 239 - -
Vian3g00659 601 Coils Coil 167 187 - -
Vian3g00659 601 Pfam GRAS domain family 245 600 IPR005202 -
Vian3g00659 601 ProSiteProfiles GRAS family profile. 222 601 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00659 Vian-Chr3 6697136 6698941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00659 31 600 GRAS Transcription Factor Family AT5G52510 43.651 2.20e-137 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian3g00659 GRAS 1.7e-88 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00659 - - vra:106769615 1001.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00659 3 6697136 6698941 Vian3g00659 3 6697136 6698941 ECH
Vian8g01032 8 27295228 27297174 Vian3g00659 3 6697136 6698941 PCT