Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00648 ATGCCAGTTGCAAAACTACCGGCCTCAGGCACAACCGGTTTCACAAAAACAGATGATGGAAATGATTCTTTAGATACAATATTCAGACAAGCAATTGGAAAAGAACCGTTGCTTTCCTTTCCTAGGGCCGGTGACAGCCCAGTACAGTGGATTCAATTACTTCATGCTTTAGATCAGCAAGAACTTCCAGGGTGGCCTTTGCTCTCTCCTGTGAAGGTTCAGTTACAAAAGTGCAACAAGTGTTCTCGAGAATTTTGCTCTCCCATTAACTATAGAAGACATATACGTGTGCAGCACCGGTTGAAAAAGCTTGATAAGGATTCTAAAAAGAATAGGGAACTTTTAGGGGCATATTGGGATAAGCTCTCCATAGAAGAGGCAAAGGAAGTTGTTTCATTCAAGAATGTGATGCTGGAGGAAGTTCCAGGGTCTTCAATTTTAGAAGCTTTGACAACTCTTAGAAAACAAGGATTTTCTTCTCTTCCGCAATATTATCTGAGGGCTGGTTCTGCCCTTTTGAATATTGTTCAATCCAGGCCATCTAGTTTTCCTATATCTTCCCAAGAGTTGTTCAGTATCCTAGATGATTCTAGTGAAAAAACATTTTTGGTCGGATCAGCAGTGTCGATGCAAAGATATGTTTTTGATGGAGAGGCTGGAAAGATTGGTCTTGAACAAAAAAACCTAGTTGCTTGCACAAGTTTCTTGCTAGAGCAGAAACTGGTGAAGTCTTGGCTTGCGGACAAGGATGCTGAAGCATTGAGATGCCAAAAGTTACTTGTGGAAGAGGAAGAAGCTGCTCAGAAAAGAAAAGCTGAGATTTTAGAGAGGAAACGGCAGAAAAAGCTCAGACAGAAAGAACACAAGGCAAAGGAGCAAATTGAAAACGACACAGAAACTAAAGGAAACATAAGCAGCGCAGGAGAGGATGTATCACCAGGAGAAGCATCTTTGGGTACATGTGACTTCGATGCACATAATCCAGATATTTTTGCGGATCATTCTCCTCCACCACCACATGTAACTTCTCACTGCCTAGACACTAATGATGTTATAGAAAAGGATACGCTGGCAGGGTATGATGATTGTGACACTGATCAGTATATAGAGCGGCAGACACTACCAGCACATAATCGCCCGGGCACAGTGCCTGGCAGATGGCAAGGGCTACCAAAATCACAATGGGCTAGAGCCAATGGTTTGAATGCAGGCCAGAATTCTCAACTGACGAAGCTTGGAGTTATTCAAAAGCATAGAACCAGCCATGATCTTAGGGTAGCTCCTATAATCAATGGCAGTAAGGTTTGGAGTCGAAAACCTAAAGCAGAATCTAATGATTTGGTTGTAAAAAACAAACTGCTGAAAGAACCAGACAAAGTTAAAAATCATGAAGTTTTGATAGGATCTGTATCAGTTAGTCTGGGTAATTCTTGCCACTCCAGAGGTAATTTTATGGCACCCCAGCGGGATTGCTCGGCGGCAGGGAATCTGTCCAAGCTCAATACTGCTCAGGAGAAACCAGGAAGCAACGGTCGTTTAACAGCTAAGTTTTGGAGGCCTGTTAGCCAGCATGGAACTAAAGACCCATTTCCACTTCAAAATGGTGGGACAGAAGCTGATGCTATTAATGGAAAAATTGATGAAAATTCGTCTGGTCAAAGTAGTTTAAGGTTGTGTAGTGTAGAGGGTAATGATGATATTGATTTTGGGGACAATTTTTCCCATAATGTGGCAAAAGTAGATACAGAAAGCTTACGTCTATCCAGCCATGCTGCAGAATCCTTTCTTGCCCAAAGATGGAAAGAAGCTATCTCATCGGACCATGTAAAATTGGTTTTCACACCTGATTCTGAGCCTCGTGGAGGACAGTCTGTCCAGGATTGTGAACTAGCAGCAGATGCTTCTGATGCGGACAGATGTGGCGTTCTTGCAAGTACAGAGAACCTGTTGCCTGCAACCTCTGGAGTAGCAAGATCTAAACCCAAAACGAAGCCTGAAAAAGGAATGAAGATAAAGTACATTCCCAAACAAAAAACAGCAGCCTAG 2046 0.4262 MPVAKLPASGTTGFTKTDDGNDSLDTIFRQAIGKEPLLSFPRAGDSPVQWIQLLHALDQQELPGWPLLSPVKVQLQKCNKCSREFCSPINYRRHIRVQHRLKKLDKDSKKNRELLGAYWDKLSIEEAKEVVSFKNVMLEEVPGSSILEALTTLRKQGFSSLPQYYLRAGSALLNIVQSRPSSFPISSQELFSILDDSSEKTFLVGSAVSMQRYVFDGEAGKIGLEQKNLVACTSFLLEQKLVKSWLADKDAEALRCQKLLVEEEEAAQKRKAEILERKRQKKLRQKEHKAKEQIENDTETKGNISSAGEDVSPGEASLGTCDFDAHNPDIFADHSPPPPHVTSHCLDTNDVIEKDTLAGYDDCDTDQYIERQTLPAHNRPGTVPGRWQGLPKSQWARANGLNAGQNSQLTKLGVIQKHRTSHDLRVAPIINGSKVWSRKPKAESNDLVVKNKLLKEPDKVKNHEVLIGSVSVSLGNSCHSRGNFMAPQRDCSAAGNLSKLNTAQEKPGSNGRLTAKFWRPVSQHGTKDPFPLQNGGTEADAINGKIDENSSGQSSLRLCSVEGNDDIDFGDNFSHNVAKVDTESLRLSSHAAESFLAQRWKEAISSDHVKLVFTPDSEPRGGQSVQDCELAADASDADRCGVLASTENLLPATSGVARSKPKTKPEKGMKIKYIPKQKTAA 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00648 681 Coils Coil 272 292 - -
Vian3g00648 681 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 680 - -
Vian3g00648 681 MobiDBLite consensus disorder prediction 653 681 - -
Vian3g00648 681 MobiDBLite consensus disorder prediction 279 315 - -
Vian3g00648 681 ProSitePatterns Zinc finger C2H2 type domain signature. 78 99 IPR013087 -
Vian3g00648 681 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 104 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00648 Vian-Chr3 6589052 6594268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00648 19 678 C2H2 Transcription Factor Family AT4G25610 43.563 2.47e-152 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian3g00648 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00648 3 6589052 6594268 Vian3g00648 3 6589052 6594268 ECH
Vian8g01058 8 27930733 27936734 Vian3g00648 3 6589052 6594268 PCT