Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00647 ATGGGTAGCATCGTGGTGGAAGACGCCGATACTGACACAGTGTATGTGGCGGTGGGAAACAACGCGGAGAAGACGCAACAACTGTTGCATTGGACGGTTAAGAATTTCTCTGGCAAGAATGTTTGTCTTCTTCATATTCACCGACCTTACTCCCTCAATTCGTTCTCATGTGCAACAGACAGGAATCTCTCTGGGTATGAGCCAAAAGACCTTCCAATCCAGGCATTCCAGGATCAGGGAAATCAATCAGTGCACGAACTTCTAGACCAATACATTCTTGATCTGGTTCCTGCAGGGGTACGGGCCTGTAAATTGTTGATTGAGATGGATGATATTGAGAAAGGGATCACAGAAGCTATTGCTCAACACAGTATTAGATGGCTTGTAGTGGGAGCAGCAGCAGATGGATATAACATGGGCAAACTGGCAAAGCAAGATTCGGAGAAGGCTATTTTTATACGCAAACAAGCATTGCTATCATGTAATATTTGGTTCATTTGCAAGGGCAACCTCATATGTACTAGGGTATATAGCAAGCATACTTCTGACATAGAGGGTGGGCCTGCTTTGTTGGTGCTCAATTCAAATACAGAAAAGTCTACATCGAAATCGACTCTAGATGCATTGAAATATTTAGATTCTGGTGATATGAAAGAAATCCAAAGTATCAGTTCCAACCGTTCCTTAAATACAAAATGGTCCTTTAATAAGGTCATGGACAGGTCAAAGTTGCCAGATTTGACGTTTCATGAGGATGAAGCATTTGAAAGCCAGTGTGCTCAGGAAATAAGAAGAAGAAAAGAAGTTGAAGAACAATTGGCAAGGTCAAAGCAAGAAGTACAGAAAATGAAGAATCAGCAGGATGAAATACTTGAAGAATTGCAAATGGTCAAAGACCAAAATTCTGCACTTATGAACCAAATTTCTGAGTCCCAGTTTACGGTAACAGAGTTTGAGGAGAAGATCATATCAGCTGTGGACCTTCTGATAAGTTTCAGGGAAAAGAGAGATAGGCTTAGAATAGAGCATGCAAATGCAGTTAGGGAAGTCCAAGTGCTTAGAACATTTGGTGAAGCGGATACTCCCTTCTCTTATCAGGTAGAATTCCCTGCATTTTCTTTTGTGGAGATCAATGAGGCAACTCATGATTTCGATCCGTCTTGGAAGATTGGAGAGGGAAGGTATGGAAGTGTTTACAAGGGACTGCTTCGCAACATGCATGTTGCCATAAAAATGTTACCCTCTTACGGTCAAGAGAGTCTATCAAAATTCCAACATCAGGTAGAGGTCTTGAGTAGGGTAAGACATCCAAATTTGTTAACACTAATTGGAAGCTGTGCAGAGTCTAGGTCACTTGTGTATGAGTACCTAAACAATGGCAGCCTTGAAAGCCACCTTGCCCGCAAAGAAAAGAATCCACTTCCATGGCAAATTCGAATGTCTATTGCTACAGATATATGCTCTGCTCTAATCTTCATTCACTCCAGCAAGCCTTGCATTATCCATGGGAATTTGAAACCTAGTAAAGTTCTCCTCGATGCTAACTTTGTTGCCAAACTGAGTGACTTGGGCATTCCTAGTTTAGTTCAGCAAAGTTTGGATTCAGCTGATGCAAACACAATATATAATAACCCAAATGAACGTTTGGCGTATGTGGATCCAGAGTATTTTGTCAATGGCAAGTTTACACCCGAATCAGATGTATATTCATTTGGAGTCATATTGTTACAACTTCTAACTGGAAGACCACTTTTGGGGTTAGTAAGGGATGTGAAGTGTGCATTGGAAAAGGAAAACCTTAAAGCAGTCTTGGATTTTTCAGCTGGTGAATGGCCACTTTATCAAACTGAACTGCTGGCATATTTAGCACTGAGGTGTTGTGAAAAGAATTGGTTGAACAGGCCAGACCTTGTGTCTGAAATTTGGAGTGTTCTGGAACCATTCAAAGCTATTCGCATTGACAAACCATATTTGATTTCAAAGAAGCTTCGTCGTGTTCCTTCACATTTTGTCTGCCCCATTGTCCAGGAAGTAATGGAAGATCCATACATAGCTGCAGATGGCTTTACGTATGAAGAAGAGGCAATAAGAGGGTGGCTGAATAGTGGCCACGACACTTCCCCCATGACAAACCTCAAGCTTGATCACACGGATTTGGTACCTAACTATGCTCTACATAATGCAATTCTGGAGTGGCAACAACAGTAA 2208 0.4158 MGSIVVEDADTDTVYVAVGNNAEKTQQLLHWTVKNFSGKNVCLLHIHRPYSLNSFSCATDRNLSGYEPKDLPIQAFQDQGNQSVHELLDQYILDLVPAGVRACKLLIEMDDIEKGITEAIAQHSIRWLVVGAAADGYNMGKLAKQDSEKAIFIRKQALLSCNIWFICKGNLICTRVYSKHTSDIEGGPALLVLNSNTEKSTSKSTLDALKYLDSGDMKEIQSISSNRSLNTKWSFNKVMDRSKLPDLTFHEDEAFESQCAQEIRRRKEVEEQLARSKQEVQKMKNQQDEILEELQMVKDQNSALMNQISESQFTVTEFEEKIISAVDLLISFREKRDRLRIEHANAVREVQVLRTFGEADTPFSYQVEFPAFSFVEINEATHDFDPSWKIGEGRYGSVYKGLLRNMHVAIKMLPSYGQESLSKFQHQVEVLSRVRHPNLLTLIGSCAESRSLVYEYLNNGSLESHLARKEKNPLPWQIRMSIATDICSALIFIHSSKPCIIHGNLKPSKVLLDANFVAKLSDLGIPSLVQQSLDSADANTIYNNPNERLAYVDPEYFVNGKFTPESDVYSFGVILLQLLTGRPLLGLVRDVKCALEKENLKAVLDFSAGEWPLYQTELLAYLALRCCEKNWLNRPDLVSEIWSVLEPFKAIRIDKPYLISKKLRRVPSHFVCPIVQEVMEDPYIAADGFTYEEEAIRGWLNSGHDTSPMTNLKLDHTDLVPNYALHNAILEWQQQ 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00647 735 Coils Coil 259 307 - -
Vian3g00647 735 Pfam U-box domain 666 734 IPR003613 GO:0004842|GO:0016567
Vian3g00647 735 SUPERFAMILY RING/U-box 663 735 - -
Vian3g00647 735 CDD STK_N 13 169 - -
Vian3g00647 735 SUPERFAMILY Protein kinase-like (PK-like) 360 645 IPR011009 -
Vian3g00647 735 Gene3D Phosphorylase Kinase; domain 1 358 456 - -
Vian3g00647 735 Pfam Protein tyrosine and serine/threonine kinase 389 637 IPR001245 GO:0004672|GO:0006468
Vian3g00647 735 ProSiteProfiles U-box domain profile. 665 735 IPR003613 GO:0004842|GO:0016567
Vian3g00647 735 CDD RING-Ubox_WDSUB1-like 667 722 - -
Vian3g00647 735 Gene3D Transferase(Phosphotransferase) domain 1 457 651 - -
Vian3g00647 735 PANTHER OS02G0152300 PROTEIN 14 731 - -
Vian3g00647 735 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 665 735 IPR013083 -
Vian3g00647 735 ProSiteProfiles Protein kinase domain profile. 384 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00647 735 SMART Ubox_2 669 732 IPR003613 GO:0004842|GO:0016567
Vian3g00647 735 ProSitePatterns Protein kinases ATP-binding region signature. 390 411 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00647 Vian-Chr3 6576408 6585104 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00647 12 735 U-box Gene Family AT2G45910 40.652 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vian3g00647 PK_Tyr_Ser-Thr 3.4e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00647 - - pvu:PHAVU_007G072300g 1296.18