Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00643 ATGTCAGAATCTGAGGAAGAAAATACAGACTGTGTTCCAAGGTCAAAGCCCGCAGAGGAAGTTGGCTGCACCATGGACTTCGATCTTGACTTAGAAACTTCATGGCCTTTGGATCACATGTCCTTTGGCTCCAATCCCATGTCACCTTTTCTGTTCTCCTCCAACTCTGACCAGCCTTACTCTCCTCTGTGGGCTTTCTCTGATGGAGAAGACGCCAAGTTTCCAGCTTCTGCCTTCTCTGATTGCCACAAGATCTTCCCTTGTGATTCAAATTCAATTGCTGAAAAGCCAGAGGAGAATGATGACAACAAGAAGCTTTTGCCACCACTTGCGCCTATGACACCACTGGAAAATGTGGGCGGATACTGTGTAATTAAGGAAAGGATGACACAAGCGCTTCGATACTTCAAAGAGTTGACTGAATTGAATGTTCTGGCTCAAGTTTGGGCACCTGTGCGGAATGGTAATCGGTATGTGCTTACAACTTCAGGTCAACCATTTGTTCTTGATCCACACAGTAATGGGCTGCATCAGTATAGAACGGTCTCTCTGATGTACATGTTTGCTGTGGATGGGGAGAACGATGGAAGTTTGGGACTCCCTGGTCGGGTTTTTCAGCAGAAATTACCAGAATGGACTCCCAATGTTCTGTATTATTCCAGTAAAGAGTATCCACGCCGAGATCATGCTCAACATTACAATGTTCGTGGATCTTTGGCTCTGCCCGTGTTTGAACCTGCATTGCAGTCATGTGTTGGTGTACTGGAGTTGATAATGACTTCTCAGAAGATTAACTATGCTCCCGAGGTTGATAAAATCTGCAAAGCCCTTGAGACAGTAAATTTGAGGAGTTCGGAAATTTTGGACCATCCATACACTCAGATATGTAATGAAGGCCGTCAGAATGCTTTATCAGAGATCTTGGAGATACTGACAGTGGTTTGTGAAACTCATAATTTACCTCTGGCGCAAACATGGATTCCTTGTAAGCATCGGAGTGTCTTGGCCCAAGGTGGTGGTGTGAAGAAAATTTGTTCTAGTTTTGATGGTAGCTGCATGGGGAAAGTTTGCATGTCTACAACTGACGTAGCATTCTATATTATAGATGCCCATTTATGGGGTTTCCGTGAGGCCTGTGTTGAGCATCACTTACAACAAAGTCAAGGGGTTGCTGGGAGGGCTTTTTTGTCCCACAGCATGTGCTTCTGTTCAAGCATTACCCAATTCTGCAAGACTGATTACCCCTTAGTTCATTATGCTCTCATGTTTGGATTAACAAGCTGTTTTGCAATATGTTTACGAAGCTCTCATACAGGAACTGATGATTATGTATTAGAGTTTTTTCTGCCTCCTAGGGTCACAGACTTTCACGAACAAAAGACTTTGTTGGCGTCCATATTGGCAACAATGAAACAGCATTTCCAGAGTCTTAAGATTGCTTCTGGTGTTGAACTTGAGGATGGTTCAATTGAAATTATTGAAGCAACAATTGAAAGAATTCACACAAGGCATGAATCCATTCCAATTGCCCCATCCATTAGATCACCTCCTAGACCTGATACTTCACCAAATATGGAGGAGGAAGTTTCACTTGATCCATCAGAGCAACACATATTGATGTACTGTAATGGTACCAATCATGGAGCGAATCTCAGTGATAAAGCAGGTGGGAAAATTGATCATATGATTACTTTAGAGACTAAAACCTCAAAGAAACCCTTAGAGAGGAAGCGTGGAAAAACTGAGAAATCAATCAGTCTTGAAGTCTTGCAACGATATTTTGCTGGGAGTCTAAAAGATGCTGCAAAGAGCCTTGGTGTTTGTCCTACCACAATGAAGCGCATCTGTAGGCAGCATGGGATATCACGATGGCCATCTCGAAAGATCAACAAGGTTAATCGTTCCCTGTCCAAGCTGAAGCGTGTTATTGAATCTGTCCAGGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTCAGCACAAGTCCACTTCCCATTGCTGTTGGTTCCCTTCCTGAACCATCTACTCGAAACAAGTTCAGCCAGCCAGTCTCAATGAGCATTAGACCATCAGAACCTCAGATGAAAGTGAATGAATTGAATGCCTCCAAAGAACTAGAAACAAACAGAGAAGCAGGAATGGAAGATCAATTGGTAGGAGGAAGAATACATAATCTTGAGAGAGTTACCAATGATAAAGGAGGTTCTACTCAGGAGATTGGGAAAGAACCGAAAAGGACTAGAACTGGAAGTGGCTCAAGTGAGGATAGCACAAACCCTACTTCTCACGGTTCATGGCATGACAGTATCCCAAATGAAAGTTCACCTGTAAAAGATATATTCATTACTTCCAACCATGACCAATGTGCAGTGCTAAGGAGATCACCAGAGTCAACACTGCAGCCAGCCACTAATACACCGAACCAGGCCACTCCTTTCTGTATGCCAGAATTTGTGGCTGCAGAACTTCAAGAGCCATTTGGAGGGATGCTAATAGAGGATGCTGGTAGTTCTAAAGACTTAAGAAATTTGTGTCCTTCAGTAGCTGAGGCCATTTTGGAGGACCTTGTTCCTGAAGCTTGTGGGACTAATCCTCCAGCCTTAGATTTGTCTCCCAAGCAAAGCATGGGTACTCCTAATAAAGCAGTGACACCTTTTGCAGCAACGAAAGAAATGAAGACTGTGACTATCAAGGCAACATACAGAGAAGATATCATAAGATTCCGGGTCTCATTGACATGTGGCATTGTGGAACTGAAAGAAGAAGTTGCCAAAAGATTGAAACTTGAGGTGGGTACGTTTGATATCAAGTACCTTGATGATGATCATGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGATGTGTCAAGATCACCAGGAAGCAACATAATCAGGGTTTTGGTGCATGACATAACGTCCAATCTTGGAAGCTCATGTGAGAGCTCGGGAGAGTGA 2967 0.4348 MSESEEENTDCVPRSKPAEEVGCTMDFDLDLETSWPLDHMSFGSNPMSPFLFSSNSDQPYSPLWAFSDGEDAKFPASAFSDCHKIFPCDSNSIAEKPEENDDNKKLLPPLAPMTPLENVGGYCVIKERMTQALRYFKELTELNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLHQYRTVSLMYMFAVDGENDGSLGLPGRVFQQKLPEWTPNVLYYSSKEYPRRDHAQHYNVRGSLALPVFEPALQSCVGVLELIMTSQKINYAPEVDKICKALETVNLRSSEILDHPYTQICNEGRQNALSEILEILTVVCETHNLPLAQTWIPCKHRSVLAQGGGVKKICSSFDGSCMGKVCMSTTDVAFYIIDAHLWGFREACVEHHLQQSQGVAGRAFLSHSMCFCSSITQFCKTDYPLVHYALMFGLTSCFAICLRSSHTGTDDYVLEFFLPPRVTDFHEQKTLLASILATMKQHFQSLKIASGVELEDGSIEIIEATIERIHTRHESIPIAPSIRSPPRPDTSPNMEEEVSLDPSEQHILMYCNGTNHGANLSDKAGGKIDHMITLETKTSKKPLERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNSLSTSPLPIAVGSLPEPSTRNKFSQPVSMSIRPSEPQMKVNELNASKELETNREAGMEDQLVGGRIHNLERVTNDKGGSTQEIGKEPKRTRTGSGSSEDSTNPTSHGSWHDSIPNESSPVKDIFITSNHDQCAVLRRSPESTLQPATNTPNQATPFCMPEFVAAELQEPFGGMLIEDAGSSKDLRNLCPSVAEAILEDLVPEACGTNPPALDLSPKQSMGTPNKAVTPFAATKEMKTVTIKATYREDIIRFRVSLTCGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECMDVSRSPGSNIIRVLVHDITSNLGSSCESSGE 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00643 988 MobiDBLite consensus disorder prediction 673 692 - -
Vian3g00643 988 ProSiteProfiles RWP-RK domain profile. 571 652 IPR003035 -
Vian3g00643 988 Pfam PB1 domain 893 974 IPR000270 GO:0005515
Vian3g00643 988 FunFam RWP-RK domain-containing protein 890 974 - -
Vian3g00643 988 Pfam RWP-RK domain 584 632 IPR003035 -
Vian3g00643 988 SMART PB1_new 893 975 IPR000270 GO:0005515
Vian3g00643 988 MobiDBLite consensus disorder prediction 672 692 - -
Vian3g00643 988 MobiDBLite consensus disorder prediction 750 776 - -
Vian3g00643 988 Gene3D - 890 974 - -
Vian3g00643 988 ProSiteProfiles PB1 domain profile. 893 975 IPR000270 GO:0005515
Vian3g00643 988 MobiDBLite consensus disorder prediction 720 776 - -
Vian3g00643 988 CDD PB1_NLP 894 974 IPR034891 -
Vian3g00643 988 SUPERFAMILY CAD & PB1 domains 889 978 - -
Vian3g00643 988 PANTHER PROTEIN NLP8 56 987 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00643 Vian-Chr3 6547575 6551663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00643 259 988 NLP Transcription Factor Family AT4G24020 52.846 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vian3g00643 PB1 2e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00643 - - gmx:100786118 1771.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01064 8 28027136 28031789 Vian3g00643 3 6547575 6551663 PCT