Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00634 ATGCAGGCTCCAACAACACTCACGGGATTGCTCCACCGCGTCGCCGGAATATTCCCTTCCCACCATGCCGTCTCTGTCTCAGGCAAATTCCAACTCACACACTCCCGCCTCCACCACCTTGTCGAACGCGCTGCCGTACGCCTCCTCTCCGCCGGCATCAAACCCGGCGATGTCATCGCACTCACCTTCCCCAACACCGTCGAGGTCCTCTCCTCCCTCACTTTCATTATAACGTTTCTGGCCGTTATTCGAGCGCGAGCCACGGCGGCGCCGTTGAACGCGGCTTACACGGCGGAAGAGTTCGAGTTTTATTTATCCGACTCGGAGTCAAAGCTGTTAATAACATCAAAAGAAGGGAACGAGCCGGCTCAAGCCGCGGCTTCCAAGCTTAGCATTCCGGTATCAACAGCCTCACTCGACGAAGCAGAAGCCGAAGAGCTCAGTCTCTCTCTGAGTTACACCGAGTCATCGACCGCCTCGATTTCCGAACTCGTTAACGACGAGGCCGACGTGGCATTGTTCCTCCACACTTCCGGCACCACGAGCCGCCCCAAGGGCGTGCCGTTGACGCAGAACAACTTGGCCTCGTCGGTGGAGAACATCAAGTCCGTGTACAAACTCACTGAGTCTGACTCGACCGTCATCGTTCTCCCATTGTTCCACGTCCACGGGTTAATCGCCGCGTTGCTGAGTTCACTAGCCGCCGGAGCCTCCGTGACGCTCCCGGCGGCGGGGAGGTTCTCCGCCTCCTCGTTTTGGAGCGACATGTTGACGTACAACGCCACGTGGTACACCGCGGTTCCTACGGTACACCAAATATTGTTGGAGCGTCATTTGAAAACCCCGGAACCGGTTTACCCGAAGCTCCGGTTTATTCGGAGCTGTAGTGCCTCGCTTGCACCGGTTATATTGGAGCGGTTGGAGGAGGCGTTTGAGGCACCGGTTTTGGAGGCTTATGCTATGACGGAAGCGTCGCATTTAATGTCGACGAATCCATTACCCGAAGATGGGCCTCATCGGGCCGGGTCCGTTGGAAAGCCCGTGGGCCAGGAAATGGCAATATTAGGCGAGAAGGGTGAGATTCTAAAGAATGATGTGAACGGTGAGGTTTGTATTAGGGGACCCAATGTTACCAAAGGGTATAAAAATAACCCTGATGCGAATATTTCTGCCTTTGAATACGGGTGGTTCCACACTGGTGATATCGGGTTTTTTGATTCGGATGGGTATTTGCATCTGGTGGGTCGGATCAAGGAGCTTATTAACCGTGGAGGGGAGAAAATATCACCAATAGAGGTGGATGCTGTCCTTCTATCTCATCCAGAAATCGCCCAAGCAGTTGCATTCGGAGTTCCAGATGATAAATATGGCGAAGAGATAAAGTGTGCGATAATCCGAAAAGAAGGATCAAAGATAGATGAGGCAGAGGTGCAGAGATTTAGCAAGAAGAATCTTGCAAGCTTCAAAGTCCCTAAAAAGGTATTCATCACTGATTCTTTACCCAAGACCGCCACTGGCAAGATTCTGAGACGTCTTGTAGCACAACACTTCATTTCTCAAACTTGA 1566 0.5262 MQAPTTLTGLLHRVAGIFPSHHAVSVSGKFQLTHSRLHHLVERAAVRLLSAGIKPGDVIALTFPNTVEVLSSLTFIITFLAVIRARATAAPLNAAYTAEEFEFYLSDSESKLLITSKEGNEPAQAAASKLSIPVSTASLDEAEAEELSLSLSYTESSTASISELVNDEADVALFLHTSGTTSRPKGVPLTQNNLASSVENIKSVYKLTESDSTVIVLPLFHVHGLIAALLSSLAAGASVTLPAAGRFSASSFWSDMLTYNATWYTAVPTVHQILLERHLKTPEPVYPKLRFIRSCSASLAPVILERLEEAFEAPVLEAYAMTEASHLMSTNPLPEDGPHRAGSVGKPVGQEMAILGEKGEILKNDVNGEVCIRGPNVTKGYKNNPDANISAFEYGWFHTGDIGFFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPEIAQAVAFGVPDDKYGEEIKCAIIRKEGSKIDEAEVQRFSKKNLASFKVPKKVFITDSLPKTATGKILRRLVAQHFISQT 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00634 521 Gene3D - 1 416 IPR042099 -
Vian3g00634 521 FunFam 4-coumarate--CoA ligase 2 419 520 - -
Vian3g00634 521 ProSitePatterns Putative AMP-binding domain signature. 174 185 IPR020845 -
Vian3g00634 521 Gene3D - 417 518 IPR045851 -
Vian3g00634 521 CDD FACL_fum10p_like 19 515 IPR045310 GO:0016874
Vian3g00634 521 Pfam AMP-binding enzyme C-terminal domain 432 507 IPR025110 -
Vian3g00634 521 Pfam AMP-binding enzyme 16 423 IPR000873 -
Vian3g00634 521 SUPERFAMILY Acetyl-CoA synthetase-like 5 519 - -
Vian3g00634 521 Coils Coil 518 521 - -
Vian3g00634 521 PANTHER ACYL-COA SYNTHETASE 18 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00634 Vian-Chr3 6390614 6393268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00634 5 520 Monolignol Biosynthesis Gene Families AT4G05160 30.885 8.89e-60 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00634 K22133 - gmx:100783685 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00634 3 6390614 6393268 Vian3g00634 3 6390614 6393268 ECH