Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00631 ATGGTTAACCAGAGGCAGCGATTGGCTCGCAAGCGATTCAAAGCAGAGCACCCTGAACTGTTTCCGAAGGTCGAGCCCACACCCCCCAAAGACCCTAACAAGAAGAAGAAGAAGAGTAGCGCGTTCAAGCGCAAACGGGCCGAGTCAAAATCCGGCTCCGGCAAAAGGCATCCTCTTAGAGTCCCCGGGATGAAGCCCGGCGATAGTTGCTTCATCTGCATGGCCAAAGACCACATCGCCAAGCTCTGCCCCCAAAAGACCGAATGGGAAAAAAACAAGATATGTTTGCGGTGTCGTCGACGCGGTCATAGAGCTAAGAACTGCCCCGAGGTACAAGATGCCGCCAAGGATGTCAAACATTGCTATAACTGTGGGGAAACTGGCCACTCTCTCTCGCTCTGTCCGTACCCTCTCGAGGAAGGAGGGACAAAGTTTGCCGAGTGCTTTGTCTGTAATCAGCAGGGACACTTGAGTAGAAACTGTCCACAAAATACTCATGGCATTTATCCAAAGGGTGGTTGCTGTAAAATTTGTGGTGGTGTGACACATTTGGCAAAAGATTGTCCTGACAAAAGATGGCAAGGATCTGTTGCTGCTAATGGCCCTGGTGGTAGATCAAAGAGAATTGAAGAGAGTCCCAGGGGCCAGGTTACCAAATTTATTAGCGGTGATGATATTGAGGATGACTTCATGATAGATGACGTACGCAGTGGCGATAATAACAAGTCAGCAAATTCAAACGATGTCAATGTAACAGCAAAGAAGAAAGATCCTAAAGTTAATTTCTTCCAGAATGAATGTAATCGCTTCTGCAAAGTCTCCGCTTCCCTAGAGTTTGAAGAATTGACATGTAAACGAGGTTTTTTTTGGTAA 873 0.4731 MVNQRQRLARKRFKAEHPELFPKVEPTPPKDPNKKKKKSSAFKRKRAESKSGSGKRHPLRVPGMKPGDSCFICMAKDHIAKLCPQKTEWEKNKICLRCRRRGHRAKNCPEVQDAAKDVKHCYNCGETGHSLSLCPYPLEEGGTKFAECFVCNQQGHLSRNCPQNTHGIYPKGGCCKICGGVTHLAKDCPDKRWQGSVAANGPGGRSKRIEESPRGQVTKFISGDDIEDDFMIDDVRSGDNNKSANSNDVNVTAKKKDPKVNFFQNECNRFCKVSASLEFEELTCKRGFFW 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00631 290 MobiDBLite consensus disorder prediction 12 35 - -
Vian3g00631 290 ProSiteProfiles Zinc finger CCHC-type profile. 95 110 IPR001878 GO:0003676|GO:0008270
Vian3g00631 290 ProSiteProfiles Zinc finger CCHC-type profile. 121 135 IPR001878 GO:0003676|GO:0008270
Vian3g00631 290 Gene3D - 63 117 - -
Vian3g00631 290 MobiDBLite consensus disorder prediction 1 63 - -
Vian3g00631 290 SMART c2hcfinal6 69 85 IPR001878 GO:0003676|GO:0008270
Vian3g00631 290 SMART c2hcfinal6 120 136 IPR001878 GO:0003676|GO:0008270
Vian3g00631 290 SMART c2hcfinal6 147 163 IPR001878 GO:0003676|GO:0008270
Vian3g00631 290 SMART c2hcfinal6 174 190 IPR001878 GO:0003676|GO:0008270
Vian3g00631 290 SMART c2hcfinal6 94 110 IPR001878 GO:0003676|GO:0008270
Vian3g00631 290 Pfam Zinc knuckle 148 163 IPR001878 GO:0003676|GO:0008270
Vian3g00631 290 Pfam Zinc knuckle 120 134 IPR001878 GO:0003676|GO:0008270
Vian3g00631 290 SUPERFAMILY Retrovirus zinc finger-like domains 116 164 IPR036875 GO:0003676|GO:0008270
Vian3g00631 290 FunFam Zinc finger CCHC-type-containing 9 145 197 - -
Vian3g00631 290 ProSiteProfiles Zinc finger CCHC-type profile. 148 163 IPR001878 GO:0003676|GO:0008270
Vian3g00631 290 PANTHER OS04G0555800 PROTEIN 1 263 - -
Vian3g00631 290 SUPERFAMILY Retrovirus zinc finger-like domains 63 111 IPR036875 GO:0003676|GO:0008270
Vian3g00631 290 Gene3D - 118 169 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00631 95 192 C2H2 Transcription Factor Family AT5G20220 28.696 1.47e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00631 - - gmx:121174300 407.527