Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00622 ATGGAAGAGGATGTTGACCAAGAAAGAAATGACCTTCAGCTCACCCCACAGCTGCATTGCACTCAAGTGGTGAAGATGGGTAAAACACCTTGTTGTGAGAAACATGGAGTCAAAAGGGGAGCTTGGACTCCTGAAGAAGACCAAGCCTTGGTTGACTACATCAAGGAGCATGGTCATGGAAGTTGGCGTACACTTCCCAAACATGCAGGTCTCTTACGATGTGGAAAAAGTTGTCGGCTTCGGTGGATAAACTATCTTCGCCCTGGTATCAAGCGTGGCCCGTTTACCAGTGAAGAAGAAAGCACAATTGTTCAACTCCATGGCATGCTTGGCAACAGGTGGGCTGCTATAGCATCCCAATTACCTGGAAGAACAGACAATGAGATTAAGAACTATTGGAACACCCATCTAAAGAAGCGTCTCCTTCGATCATGTCATTCCCTAAGAGAAAAACAGTCGTGTCTGGTTCTGGATCAAACTATTGTCAAGTCTGAATCTCCTTCTACGCGTCACATGGTACAGTGGGAAAGTGTAAGAGTTGAGGCAGAGGCAAGGTTGTCAATGGAATCCTCGTTCCTCAATTCATGGCCAAAGAGTTCAACATGCCCTGATCATTTTCTTCATCTTTGGCATTCTGAGGTTGGAAAGTCATTTCGCATGGTCAAGGGAAAGGAAGGGATTGTGAGTCAAAGTCCTGTTTCACATCCTTCATCCTCATCTAAATTGGAGTCTTGTTCAGATGTGTCATTGCAGGTGAAAAACAGTACTAGTAGCCTCTATCCATGCATTGAGGATGTGAACATGGTTCATGAACAGATAAGTAGCTACAAACCAAAGCTTGATGACACGGCTGGGTCTGACTCAGGCAATTATGAATTTCTTGATACTTCAGATTCTGCATTAAAGCACCTACTACATATCTCTGATGATGTTGGATTCCTGGGACAGAATGATAATTTCTTGAATCTCCTTGATGCAACATGTGACCAAGATAGTTTCTTTCATATCTCTTCAGAGAAAGGCAATCTTTGA 1032 0.436 MEEDVDQERNDLQLTPQLHCTQVVKMGKTPCCEKHGVKRGAWTPEEDQALVDYIKEHGHGSWRTLPKHAGLLRCGKSCRLRWINYLRPGIKRGPFTSEEESTIVQLHGMLGNRWAAIASQLPGRTDNEIKNYWNTHLKKRLLRSCHSLREKQSCLVLDQTIVKSESPSTRHMVQWESVRVEAEARLSMESSFLNSWPKSSTCPDHFLHLWHSEVGKSFRMVKGKEGIVSQSPVSHPSSSSKLESCSDVSLQVKNSTSSLYPCIEDVNMVHEQISSYKPKLDDTAGSDSGNYEFLDTSDSALKHLLHISDDVGFLGQNDNFLNLLDATCDQDSFFHISSEKGNL 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00622 343 Pfam Myb-like DNA-binding domain 92 137 IPR001005 -
Vian3g00622 343 Pfam Myb-like DNA-binding domain 39 86 IPR001005 -
Vian3g00622 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 26 271 - -
Vian3g00622 343 CDD SANT 94 137 IPR001005 -
Vian3g00622 343 Gene3D - 94 141 - -
Vian3g00622 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 86 IPR017930 -
Vian3g00622 343 FunFam Myb transcription factor 36 92 - -
Vian3g00622 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 141 IPR017930 -
Vian3g00622 343 Gene3D - 39 91 - -
Vian3g00622 343 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Vian3g00622 343 ProSiteProfiles Myb-like domain profile. 34 86 IPR001005 -
Vian3g00622 343 CDD SANT 41 86 IPR001005 -
Vian3g00622 343 SUPERFAMILY Homeodomain-like 36 133 IPR009057 -
Vian3g00622 343 SMART sant 91 139 IPR001005 -
Vian3g00622 343 SMART sant 38 88 IPR001005 -
Vian3g00622 343 FunFam MYB transcription factor 94 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00622 Vian-Chr3 6276463 6279292 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00622 26 317 MYB Transcription Factor Family AT3G61250 51.987 5.09e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian3g00622 Myb_DNA-binding 3.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00622 K09422 - gmx:100782075 523.857