Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00620 ATGGGGTGCCAGCCATTGGAAAAGGGAAAACCAAAACATAAGAAGGGGTTATGGTCACCAGAAGAAGACAATAAACTCAGAAACTACATCCTTAAACAAGGTCATGGCTGTTGGAGTTCTGTTCCCATTAAGGCAGGAAGAACAGATAATGAGATTAAAAACTACTGGCATTCATATTTGAAAAAGAAAGAGGCAAAAGCTAAGGAAATGGATTCTCATAACCAAATAAAGTATGCTAGCTCAAGCTCAGATACCATGGAGTCTTCAAACTCTCTCAAAAACCTTGCAACTCAAGGTACACAGAGTTGTAACTTCACCAAAGAGGCTAGCCAAAGCTCCTTGCCAAAACTGTTATTTGCTGAGTGGCTTTCATTGGATCAAGTAAACTCTGCAAATTCAGTTGACTCTTTTGGTTTGAGGAATGGATTTGATCAAAATTCAACTCTTCAGGAGGCTGCAATCCATGATATGTCAGATATACCCTTTGGTGGAGGGTACCATAGATGCTTGGCTAACATTTCAGCCCCTGAGATTTTGAATTCAGAGCTGAAGTATGCAAATCAGATGGCGGAAAATGGTTTCATCCATTGTGTGCCTGGAGTTGACTTGATGAGTAGCAATTTCAGCATGAGCAATGATGCGATAATGTACATATGA 657 0.4018 MGCQPLEKGKPKHKKGLWSPEEDNKLRNYILKQGHGCWSSVPIKAGRTDNEIKNYWHSYLKKKEAKAKEMDSHNQIKYASSSSDTMESSNSLKNLATQGTQSCNFTKEASQSSLPKLLFAEWLSLDQVNSANSVDSFGLRNGFDQNSTLQEAAIHDMSDIPFGGGYHRCLANISAPEILNSELKYANQMAENGFIHCVPGVDLMSSNFSMSNDAIMYI 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00620 218 Gene3D - 14 66 - -
Vian3g00620 218 SMART sant 14 62 IPR001005 -
Vian3g00620 218 ProSiteProfiles Myb-like domain profile. 10 60 IPR001005 -
Vian3g00620 218 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 64 IPR017930 -
Vian3g00620 218 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 162 171 IPR017972 GO:0005506|GO:0016705
Vian3g00620 218 SUPERFAMILY Homeodomain-like 11 64 IPR009057 -
Vian3g00620 218 Pfam Myb-like DNA-binding domain 15 60 IPR001005 -
Vian3g00620 218 CDD SANT 18 60 IPR001005 -
Vian3g00620 218 PANTHER MYB DOMAIN PROTEIN 55 8 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00620 Vian-Chr3 6269886 6272071 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00620 7 124 MYB Transcription Factor Family AT5G52260 31.795 2.78e-20 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian3g00620 Myb_DNA-binding 2.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00620 K09422 - gmx:778167 294.664