Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00606 ATGGGCTTTCTCCGTCGAATTTTCGGCGCCAAAAAACCCTCAGACTCCAAACACCCCAAGAAAAGATGGGCCTTCCTCAAGCCTACAGCCCGGAACAAGTCACTCCCACCGCCACTGCCCCCTTCTGCCTTCAACGCCCACTTTGATTCTTCCAATCCTTTGGACGCCAACAAGCATGCCATCGCCGTCGCCGCCGCTACCGCCGCCGTCGCCGAGGCCGCCCTAGCCGCTGCGCACGCCGCAGCAGAGGTTGTCAGACTCACGAGCGGCGCCACCGCCGCCACAAGTACCAGCAACAGCACAAGACCGGCCGCCGCGGCGCGTGTTAGCCAGCTGCGGTTGCCGGAGCAGACTGCCGCCGTTAAGATACAATCAGCGTTCCGTGGCTACCTGGCAAGGAGGGCATTGAGAGCACTGAAAGCATTGGTGAAGCTGCAAGCATTGGTTAGGGGCCACATTGTGAGAAAGCAAAGTGCTGATATGCTGAGGCGCATGCAGACATTGGTGAGACTTCAGGCCCAGGCACGTGCAAGCCGTGCGCACTTGTCATATAATACGCCTTCTTTCAAGTCTTCCCTTTCTCACTACCCTGTCCCTGAACAACATGAACACCCACCTCGTGTCCTGAATACAAAATTTGATGGATCTTCTATCCTTAAGAGATGTAGTTCCAATGCCAACTTTAGGAACGTTGACTCAGAACGACCCCGGTTTGATTCGAATTGGTTAAACCGTTGGATGGAATTAGATAACAAGTGCAGGCAAACTGGAGATGCTTCATTGAAAACTGGACGCCCAGACGATGATAAAAGTGACAAGATTCTCGAAGTAGATACTTGGAGGCCACACTTCAAGTCTCACCACAGTAGCAGCTCCTTTCAGACAGCACATTATTATTTGAGTTCTGACTACAATAATGATAACTTTATGGCACATGAGTCTCCATCAAAACGTTCGGCAAAGACTGTAAACCAAAGTTTCTCATCAAGGGAGGTGTTGCAGCTGAACTCTCTGAAGTTTCAGAAGGGGAAAGAAGAAGCGACTTCAAGAACTGCTGACAATAGTCCACAAGCTTTTTCAGCCAATTCTAGAAATGGAAGTGGTGCAAGGAGGGGTCCCTTTACACCTACCGGGAGTGAGTACTCCTGGGGTTTCTTCAGTGGCTACTCGGGTCACCCCAATTACATGGCAAATACTGAATCTTTTCAAGCCAAGGTTAGATCACAAAGTGCACCAAGACAAAGGCTGGAGTTTGACAGACACAGTTCCACTAGGAGACCTGTTCATGTGGTGGGGCCTAATTCAGACCAGGATTCAGATTTAAGAAACAAAGTCTTACCTGCTTCTAACACTGTCAACAGAATTGGGAGTAGTAATTTAAGGTGA 1386 0.5007 MGFLRRIFGAKKPSDSKHPKKRWAFLKPTARNKSLPPPLPPSAFNAHFDSSNPLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSGATAATSTSNSTRPAAAARVSQLRLPEQTAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQSADMLRRMQTLVRLQAQARASRAHLSYNTPSFKSSLSHYPVPEQHEHPPRVLNTKFDGSSILKRCSSNANFRNVDSERPRFDSNWLNRWMELDNKCRQTGDASLKTGRPDDDKSDKILEVDTWRPHFKSHHSSSSFQTAHYYLSSDYNNDNFMAHESPSKRSAKTVNQSFSSREVLQLNSLKFQKGKEEATSRTADNSPQAFSANSRNGSGARRGPFTPTGSEYSWGFFSGYSGHPNYMANTESFQAKVRSQSAPRQRLEFDRHSSTRRPVHVVGPNSDQDSDLRNKVLPASNTVNRIGSSNLR 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00606 461 ProSiteProfiles IQ motif profile. 116 144 IPR000048 GO:0005515
Vian3g00606 461 ProSiteProfiles IQ motif profile. 140 167 IPR000048 GO:0005515
Vian3g00606 461 Pfam IQ calmodulin-binding motif 119 137 IPR000048 GO:0005515
Vian3g00606 461 Pfam IQ calmodulin-binding motif 140 157 IPR000048 GO:0005515
Vian3g00606 461 MobiDBLite consensus disorder prediction 350 372 - -
Vian3g00606 461 SMART iq_5 138 159 IPR000048 GO:0005515
Vian3g00606 461 SMART iq_5 115 137 IPR000048 GO:0005515
Vian3g00606 461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 161 IPR027417 -
Vian3g00606 461 PANTHER IQ-DOMAIN 5-RELATED 17 431 - -
Vian3g00606 461 MobiDBLite consensus disorder prediction 403 442 - -
Vian3g00606 461 MobiDBLite consensus disorder prediction 412 426 - -
Vian3g00606 461 Pfam Protein of unknown function (DUF4005) 355 421 IPR025064 -
Vian3g00606 461 Gene3D - 115 168 - -
Vian3g00606 461 MobiDBLite consensus disorder prediction 338 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00606 Vian-Chr3 6111937 6116077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00606 1 423 IQD Protein Family AT5G62070 46.065 1.05e-63 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00606 - - gmx:100783694 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00606 3 6111937 6116077 Vian3g00606 3 6111937 6116077 ECH
Vian8g01120 8 29381134 29385288 Vian3g00606 3 6111937 6116077 PCT