Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00605 ATGCTTCCTACGATTCAACACATAAAGTTCTCCGATTTGATTATATCCCAAAGGTCATGGACGGTGTTGGTATCTTGTTCCTTCCATGGATTACTTGCTCTGTCTCAAACCCTAATTGTGCTACATCGTCTTAGATTCCTCGGCTACTTTGTTCCTCTCTATAACTACCGGTTATCAATGGATGGGAATCGAAATGGGTTGGGTATTTTGCATGAAGGTAGTGTTGATGTTGGACCTGAGATGTCCAATAACTTGGACTTGAATGTGGAACAGAACTGTTGTAGTCCAAACATTGCTCATGCTAGTGACAATCAATCTTGTCCTCCATCAAAAAGTGTACACAGCACAAATACTGTTTTGGGAATTGGTGCAGAATTCGAGTCTGATGATCATGCATACCGATTCTATAATAAGTATGCGACTTTGGTGGGTTTCAATGTTAGAAAAGATTGGATAAATAGGAGTAAGGTGCATGGTCAGGTGGTGTCTAGAAAGTTTACCTGCTCCAAAGAGGGGTACCGCAGGAAAGACAAAAGAGATGTCAATGTGAAGAAGCATAGGAAGGAAACGAGAACTGGCTGCTTGGCACATATGATCGTCACTCGGCAGCCAAATGGAAAATACCAGGTCACCCATTTTGAAGCACAACATAATCATGACAATGTAAACCCTAACAATGCTAACGTGGTAAACTTGCTAAATGAATTTAGTGTTGCTCAAGCTATGGAAGCTGAATCAAACAATAGTTTGGGACCTAAATCAGAGTCAGCATTGGATATGTTGAATAAAAAAATAAGTGCACACGAATCTCTTGATATACTTTCAATGAATTATGACAACTATCTTCATTGTGCAAGGGAAAGAGATATGAGGGAAGGAGAAGCAGGGCGTTTGCTTTGTTACTTCCAAAGGCAGCACTTCGAAAATCCAGCATTTTTTTATGCCATACAGCTTGATGTTGATGACAAGGTTAGCAATATGTTTTGGTCTGACGACAGTATGGTCGTGGATTTTGATCACTTTGGAGATGTCATTTGTTTGGATACAATTTGCAGAACGAATGAAGATCTTCGGCCACTTGTACAGTTTTTAGGTGTTAACCATCACAGACAAGTTTTAATATTTGCTGCTGCTTTTTTGTATGATGATTCCATTGAATCATTTACTTGGTTATTTCGAACTTTCATTAATGCTATGTCCGGGAAAAAGCCAAAGGCCATTCTCACAGAACAAGAAGCTGTAATCATTGAAGCAGTCAATACAGTTTTACCTGACACAAATCATTGTACATGTGTATGGCAGTTGTATGAGAACACTTTGAAACACCTCAGTCATGTTGTAAAGGATGCGGAATCTCTTGCAAATGATCTGCGGAGCACTCTTTACGACCCCAAGGATGAGGAGGAATTTACTCATTCTTGGGAAACTGTGATAGAGAAGTATAATCTGCAGCAAAATGAATGGCTGAGATGGATGTATAGAGAAAGAGAGAAATGGGCTGTTGTCTTTGGTCGAAATACATTTTTTGTAGACATCAAAGGCTTTCATTTAGCTGAGATTTTGTCTCATAAGTTTAGAAGTTATCTAAATCCTGAAATTGATGTAGTTCAATTTTTTAAGCATTTTGAAAGGGTAGTAGGTGAACAGCGTTATAAAGAAATAGAAGCTAGTGATGAAATGAGCAGGTGTTTGCCAAGACTAATGGGTAATGTGGTTCTGTTGAAGCATGCAAGTAATATTTATACACCAAGAGCATTTGAAGTATTTCAGCGAGCATATGAGAAGTCTTTGAATGTTATTGTTAATCAATACAGTAGAAATGGATCATTGTTTCAGTACAAAGCAAATACATTTGGGCATAATAGACAATACAATGTCACCTTCAATTCCTCTGATGACACAGTTGTCTGCAGTTGTATGAAGTTTGACCGTGTTGGATTTCTGTGTGATCATGCGCTTAAAGTTCTTGATCAAAGAAACATAAAAGTAGTTCCACCTCAGTACATCTTGGAGAGATGGACTGAAGATGCGAGGATGAGAAATCTTAGAGAGATTAGGCAATGTAAGATGCAAGATAATCCTAAAAGGGTTGTTGCTAGCTGTTACAAAGACTTGTGCCACAAATTGCTCAAGTTGTCAACAATAGCGTCTGAATCCGAGGAAGCTTATCAATTTGCTATGAGGCAACTTGATGAAGTGATGGTAGGAGTGGAGAAAATCTTGACACCGAAAGCTGAAGGTGAAGTTGTCACCTCACGTAATTCTGATGTAGATGCTTCAGAAAGTGAGCCTGCAAAGATCTTTCCGAATGAGCATATAATTGAGGATCAGGATGAAATTAACAGCGCAAATGGTGGAAAAGACAGGAGAGCCACGTCAGACAGGGGGCACTTAATAACCATGACATGTAATGGAGCCGATTCTGACAGGATTTTGAATGTAGAAGAGTCACCGCAAAATACTGTTGTCTGTATTTCGAGCCCCCCCTCTACATATGTTTCATCTCAGCCTGCAGCACCGAATCCGATTGTGCAGGGTTTGTACAGTTTTGAAGCCAATCAAGTGGTTAACTGCATGTATGAGCAGACTAATCTTATGGTGGACAGTCAATCTAATTCTAGCATGATGCAACCGCAAAACATCTTTTCTAACCCACAGGATTCTCCTGGTCAATCTCAACTATTGCAGGAGCCTATAATCCAGAGCACTTACCTTGAGTCCATGCCAATCAATAATCAGATGCGGCAGGGAATGGATCTTGACATTCAAAATCCTCATTCGTCGTCGTTCTTGCTGTATGACCATAGATACAGAAGTTCTGAGTCTGCATGA 2832 0.3969 MLPTIQHIKFSDLIISQRSWTVLVSCSFHGLLALSQTLIVLHRLRFLGYFVPLYNYRLSMDGNRNGLGILHEGSVDVGPEMSNNLDLNVEQNCCSPNIAHASDNQSCPPSKSVHSTNTVLGIGAEFESDDHAYRFYNKYATLVGFNVRKDWINRSKVHGQVVSRKFTCSKEGYRRKDKRDVNVKKHRKETRTGCLAHMIVTRQPNGKYQVTHFEAQHNHDNVNPNNANVVNLLNEFSVAQAMEAESNNSLGPKSESALDMLNKKISAHESLDILSMNYDNYLHCARERDMREGEAGRLLCYFQRQHFENPAFFYAIQLDVDDKVSNMFWSDDSMVVDFDHFGDVICLDTICRTNEDLRPLVQFLGVNHHRQVLIFAAAFLYDDSIESFTWLFRTFINAMSGKKPKAILTEQEAVIIEAVNTVLPDTNHCTCVWQLYENTLKHLSHVVKDAESLANDLRSTLYDPKDEEEFTHSWETVIEKYNLQQNEWLRWMYREREKWAVVFGRNTFFVDIKGFHLAEILSHKFRSYLNPEIDVVQFFKHFERVVGEQRYKEIEASDEMSRCLPRLMGNVVLLKHASNIYTPRAFEVFQRAYEKSLNVIVNQYSRNGSLFQYKANTFGHNRQYNVTFNSSDDTVVCSCMKFDRVGFLCDHALKVLDQRNIKVVPPQYILERWTEDARMRNLREIRQCKMQDNPKRVVASCYKDLCHKLLKLSTIASESEEAYQFAMRQLDEVMVGVEKILTPKAEGEVVTSRNSDVDASESEPAKIFPNEHIIEDQDEINSANGGKDRRATSDRGHLITMTCNGADSDRILNVEESPQNTVVCISSPPSTYVSSQPAAPNPIVQGLYSFEANQVVNCMYEQTNLMVDSQSNSSMMQPQNIFSNPQDSPGQSQLLQEPIIQSTYLESMPINNQMRQGMDLDIQNPHSSSFLLYDHRYRSSESA 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00605 943 Pfam MULE transposase domain 344 438 IPR018289 -
Vian3g00605 943 ProSiteProfiles Zinc finger SWIM-type profile. 624 660 IPR007527 GO:0008270
Vian3g00605 943 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 109 738 IPR031052 GO:0006355
Vian3g00605 943 Pfam FAR1 DNA-binding domain 134 220 IPR004330 -
Vian3g00605 943 SMART 26again6 635 662 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00605 Vian-Chr3 6104360 6107971 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vian3g00605 MULE 1.4e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00605 - K17604 gmx:100809803 1423.3