Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00597 ATGGATGGCAACCCTTTTGGAAACGTGCCACCACCACCAATACAAGTCCCTGATAACTTTCCTCACTCATCCTCCTCTTCGCCAACCCCAACCACGTCCTCTCCGTCTCCCACTCCTTCCGCCGGCTTCCGCTACAGGGGGACGCGCTCCCGTTGCGGTAAGTGGGTGTCGGAGATAAGGGAGCCACGTAAAACCACGCGCATTTGGCTGGGGACTTACCCGGCACCGGACATGGCTGCGGCGGCCTATGATGTCGCGGCTTTTGCGTTGAAGGGACCCGACACGCCCCTTAACTTCCCCAATTCCATACTCTCGTACCCGATTCCCGCGTCATTGTCTGCCACCGATATTCAAGCCGCGGCTGCGGCAGCAGCGCAGGCTAGGCTCGTGAGGGCGCCGCAGGAGAGTGGGCAGGCGATAAACCCTGATATTGGACAGGAGTCGGAGAGGCGTGATGAGTACTATGATGAGGATGAGTTGTTGAACATGCCGAATTTGCTTGATGACATGGCCAGGGGAATGCAGGTTAGTCCCCCAAGGATCAGTTCCTTTTCTTCTGATGATTCGCCTGGCAATTCTGATGCAGATAACCTTTGGAGTTATACCCTCTGA 612 0.5637 MDGNPFGNVPPPPIQVPDNFPHSSSSSPTPTTSSPSPTPSAGFRYRGTRSRCGKWVSEIREPRKTTRIWLGTYPAPDMAAAAYDVAAFALKGPDTPLNFPNSILSYPIPASLSATDIQAAAAAAAQARLVRAPQESGQAINPDIGQESERRDEYYDEDELLNMPNLLDDMARGMQVSPPRISSFSSDDSPGNSDADNLWSYTL 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00597 203 MobiDBLite consensus disorder prediction 178 203 - -
Vian3g00597 203 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Vian3g00597 203 ProSiteProfiles AP2/ERF domain profile. 44 100 IPR001471 GO:0003700|GO:0006355
Vian3g00597 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 26 175 - -
Vian3g00597 203 MobiDBLite consensus disorder prediction 1 48 - -
Vian3g00597 203 MobiDBLite consensus disorder prediction 1 18 - -
Vian3g00597 203 Gene3D AP2/ERF domain 43 102 IPR036955 GO:0003700|GO:0006355
Vian3g00597 203 MobiDBLite consensus disorder prediction 19 43 - -
Vian3g00597 203 MobiDBLite consensus disorder prediction 171 203 - -
Vian3g00597 203 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
Vian3g00597 203 SMART rav1_2 44 106 IPR001471 GO:0003700|GO:0006355
Vian3g00597 203 Pfam AP2 domain 51 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00597 Vian-Chr3 5990501 5991112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00597 45 201 AP2-EREBP Transcription Factor Family AT5G52020 55.882 5.67e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian3g00597 AP2 2.6e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00597 - - gmx:100776717 299.286