Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00594 ATGGAGATGGAGAGGTACACCAGTCAGCAGTGGCGACCTACTGACGATCAGGTCAGAATGATGACCCACATCTACAATTACGGGGTCACACATCCTAGCAGAGCTCAAGTCGTTGAGATTGCATCTCGACTAAGGGCTTTCGGAGAAGCCAGTGAATATAATGTGCACTGCTGGTTTAACAACCACGGCAATCGGGTCAGGCGCTGGCAAGCGGAGATAGACCCCACTGGCACTCAGTTTTCACAACTGCCGCTATACATGTATGAATACGACTGGGTGATCATGAGGGCGCCAAGGCTGCTGGACTTGTTCCCCGTTCCGATCATCATTGACGACGATAGGGACGAACGACAAATCCCTCCACCCATGCTTCTCACATTCCGGACCAGAGCTCCCTCGACGGAGCTCTCCCTCAGACCACCGCAACCAGCTCGGGAATTTTTTCGCTGA 450 0.5311 MEMERYTSQQWRPTDDQVRMMTHIYNYGVTHPSRAQVVEIASRLRAFGEASEYNVHCWFNNHGNRVRRWQAEIDPTGTQFSQLPLYMYEYDWVIMRAPRLLDLFPVPIIIDDDRDERQIPPPMLLTFRTRAPSTELSLRPPQPAREFFR 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00594 149 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 3 68 IPR044555 GO:0003700|GO:0099402
Vian3g00594 149 SUPERFAMILY Homeodomain-like 10 70 IPR009057 -
Vian3g00594 149 Pfam Homeodomain 9 68 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00594 Vian-Chr3 5935098 5935643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00594 7 72 Wox Gene Family AT5G59340 39.394 8.50e-12 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian3g00594 Homeodomain 6.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00594 - K06662 vum:124821070 283.493