Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00578 ATGACACTGCACACAGTGTTTACTGCGGTCTCAGTGTATCTGATTCTCATCCATGCATCAATGGTTGCTAACTCAGCCATGGATCCCTACAAAGCCCTCAACATCATCCTCAACCCAAACGGCACCCTCACACGCTTAAGCATTTCGCCGCAAAGCCCTCCCTCGCCAGATCCCTCGCTCCCCACACCGGCGCTGCACTGGATCAAAGCCTCCAACGACGCCTGGTTGCGCCACGCCGATTACTCCCGCTGCTATCTGATGGGGGAGAGTGCCGGGGGAAACATTGCCTACACGGCTGGTCTACGTGCGGCGGCGGAGGTTGGCAAGTTGAAACCGCTGAAGATTGCAGGGTTGATATTGATTCAACCGTTTTTTGGTGGGAAGAAGAGGAGTCCATCAGAGATAAGGCTTGCCGAGGACAACACTATACCTTTGCCTATCACAGATCTGATGTGGAATCTGTCGCTGCCCGTTGGCGTTGACCGTGATTACCCGTATTCAAATCCAACTATCAACGGTGGAGATAAGATTTTGGATGAGCTTAAGGTTCTTGGTTGGAGGGTTGCGGTGTTTGGATGTGAAGGGGACCCACTGGTGGCCCGCGAGAGAGAGCTGGTGAAATTGCTTGAGCATAAGGGTGTGCACGTGGTTGGAAAGTTTTATGAAGGGGGTCGACATGGCATCTTTGTGGGTGACCCTTCCATGTCCCTCCAAGTCTTTCGTTTACTTAAAACTCTTCATTAG 744 0.5215 MTLHTVFTAVSVYLILIHASMVANSAMDPYKALNIILNPNGTLTRLSISPQSPPSPDPSLPTPALHWIKASNDAWLRHADYSRCYLMGESAGGNIAYTAGLRAAAEVGKLKPLKIAGLILIQPFFGGKKRSPSEIRLAEDNTIPLPITDLMWNLSLPVGVDRDYPYSNPTINGGDKILDELKVLGWRVAVFGCEGDPLVARERELVKLLEHKGVHVVGKFYEGGRHGIFVGDPSMSLQVFRLLKTLH 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00578 247 SUPERFAMILY alpha/beta-Hydrolases 64 233 IPR029058 -
Vian3g00578 247 PANTHER ARYLACETAMIDE DEACETYLASE 64 224 - -
Vian3g00578 247 Pfam alpha/beta hydrolase fold 64 229 IPR013094 GO:0016787
Vian3g00578 247 Gene3D alpha/beta hydrolase 62 245 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00578 Vian-Chr3 5758114 5759130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00578 74 234 Carbohydrate Esterase AT5G16080 33.742 8.58e-23 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00578 - - var:108324928 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00578 3 5758114 5759130 Vian3g00578 3 5758114 5759130 ECH
Vian8g01160 8 30082204 30083277 Vian3g00578 3 5758114 5759130 PCT