Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00576 ATGAATCCTTTACACCCTACTGATGAGTTGTACTTTCAGATTACAACTGATAATTACTATTTCCAACCAATCCAAACAACCCCTCCAGAAAATCAGATCTTCTATGATCCTGTGCTCGATGGTAGTGCTCCCATTCCCTGTACAGCTCAAATGGGCACTACCAAGGGCAAGCAGAGAGGAAAGTTACCAGCTTGGACAAAGGAAGATTATAAGACCACCACCATGGATGAAAACAAGAGGTGGATGCATAGAGAGACTGAAAAACAAAGAAGGCAAGAAATGACCAGGCTTTGCACTGACTTTAGATCTCTTCTGCCTCTTCAATATATCAAGGGAAAACGCTCAATTTCTGATCACATGCATGAGGGTGCAAATTACATCAAACACCTTGAAAATAATGTGAAAGAGTTGCAAGCTAAGAGAGACGAGTGTAAGAAGTTGTCCAATTTGAGTCCTGTTGTTGTTTCTGATAGTGGAAGCTTTAGCACTACCGATCTTCCGATATGTGTCATTGTTCATCCTTTTCCGGGAGGTATTCAGATTAAGTGTAGTTCCAGCTTCAGAAAATATGTCTTTCCTTTGTCAAGAGTGATAGATATGGTGCTTAAAGAAGGGCTTGATGTGGTCAACTGTACCTCTACCAAAACAGATGACAGCTTCATACACACTATCCGAATAGAGGTTCCACATACCATGACTGGGACTAATTACACTGAACTGCAAAAGAAGCTTGTCGAAGCGATATCATCTTCATGTACAAATTCGTGTGTACATGCTATTATTGTACCACTAGTCGCTGGTTGTCATGTCCATTGGAACACTCTGAATCCAGATGAAAGAGTAAAGTTCAAAAATGGCAACGGTATTCCATGA 873 0.4078 MNPLHPTDELYFQITTDNYYFQPIQTTPPENQIFYDPVLDGSAPIPCTAQMGTTKGKQRGKLPAWTKEDYKTTTMDENKRWMHRETEKQRRQEMTRLCTDFRSLLPLQYIKGKRSISDHMHEGANYIKHLENNVKELQAKRDECKKLSNLSPVVVSDSGSFSTTDLPICVIVHPFPGGIQIKCSSSFRKYVFPLSRVIDMVLKEGLDVVNCTSTKTDDSFIHTIRIEVPHTMTGTNYTELQKKLVEAISSSCTNSCVHAIIVPLVAGCHVHWNTLNPDERVKFKNGNGIP 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00576 290 CDD bHLH_AtORG2_like 79 151 - -
Vian3g00576 290 Gene3D - 69 151 IPR036638 GO:0046983
Vian3g00576 290 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 78 130 IPR011598 GO:0046983
Vian3g00576 290 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 148 IPR036638 GO:0046983
Vian3g00576 290 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 76 246 - -
Vian3g00576 290 Coils Coil 120 150 - -
Vian3g00576 290 Pfam Helix-loop-helix DNA-binding domain 79 131 IPR011598 GO:0046983
Vian3g00576 290 FunFam Transcription factor bHLH126 70 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00576 Vian-Chr3 5740270 5741608 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00576 83 248 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 38.728 4.83e-32 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian3g00576 HLH 3.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00576 - - gmx:100803786 377.867