Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00575 ATGTTTCCTTTACAACGCGGCAATGAGCTGGTGATCCAATTTTCTAATGCCCTCCAACCGCAACACAAAATCTCTAAAGATCTCATCCTGGATGATCACAACAGCGATAATCCGCCCCTTGTCGCTTATTCAGACAAAAAAGTGCGTACTAGGCCCCCCAATAAACTCTTTTATGCGCCTGAAACCAGTCACGCTAATTCTGCAGAAGAAGAATACGCAAAGAAGATGGTTCACAGAGAGATTGAGAGGCAAAGGAGGCAAGAAATGGCAACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTCCCTTCATCAAGGGAAAGAGGTCGATGTCTGATCAAATGAACGAGGCGGTGAATTACATAAACCACCTGCAGAAGAATATTAAAGAATTGAGTGAGAAGAGGGATAAGCTGAAGAAGAAAGTTGCCATAAATTCCAGCCTCGAAAGCCGTGAGAACAAGCATGAATCATGTGGTTTCACTGTCCGCCAAACTAGTAGTGGAGCTGTGGGAATCGAAATCAGTGGATTGAGTGAGGAAGGGGTTTCACTTTCTAAACTGTTGGAACTGTTGTTAGAAGAGGGACTTGAAGTTGTTTGTTGTCTTTCAACTAAAGTCAATGGCAGACTACTCCACAGTTTGCAGTGTGAGGTTGTCAATTCCGACACTGTAGATCTGTCTGAGCTGAGAAGAAAATTCTCCAATGTAGTTCCATCATTTAGAGTTTCTGAATAA 738 0.4336 MFPLQRGNELVIQFSNALQPQHKISKDLILDDHNSDNPPLVAYSDKKVRTRPPNKLFYAPETSHANSAEEEYAKKMVHREIERQRRQEMATLHASLRSLLPLPFIKGKRSMSDQMNEAVNYINHLQKNIKELSEKRDKLKKKVAINSSLESRENKHESCGFTVRQTSSGAVGIEISGLSEEGVSLSKLLELLLEEGLEVVCCLSTKVNGRLLHSLQCEVVNSDTVDLSELRRKFSNVVPSFRVSE 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00575 245 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 69 237 - -
Vian3g00575 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 125 IPR011598 GO:0046983
Vian3g00575 245 SMART finulus 79 131 IPR011598 GO:0046983
Vian3g00575 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 145 IPR036638 GO:0046983
Vian3g00575 245 FunFam Transcription factor bHLH126 65 153 - -
Vian3g00575 245 CDD bHLH_AtORG2_like 74 150 - -
Vian3g00575 245 Pfam Helix-loop-helix DNA-binding domain 74 126 IPR011598 GO:0046983
Vian3g00575 245 Coils Coil 115 142 - -
Vian3g00575 245 Gene3D - 64 158 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00575 Vian-Chr3 5730004 5730967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00575 78 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 42.262 5.36e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian3g00575 HLH 2.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00575 - - pvu:PHAVU_007G064300g 379.793