Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00574 ATGCCATCTCGACAACTCTCCACGTCACCACCACCTTCTAACCGCCGCATCTTAACCCCTCCGGTAACTTCCACCGCCTCCCTTTGCTCTTTATTCTTTTTACTTTGCCTCTGCTTCCGCAAGCGTAAACGCACCACCCCTTCCTCCGACTCCGACTCCACTCCCCCTCACCCCTTCTCCTACGCCCTCCTCCGCCGCGCCACCAACTCCTTCTCCACGCGCCTCGGCCACGGTGGCTTCGGTCCTGTCTTCGCCGGCACCCTTGCCGGCGACCCGGTTGCCGTCAAGCTCATGGATTCTGCCTCCCAGCAGGGAGAGCGCGAGTTCAACAACGAGCTCTTCTTCGCGTCCAGGCTTCGGTCCCCCTCTCTCGTCCCCGCCATCGGCTTCTCCTCCGACCCTAAACGTCGGCGTTTCCTCCTCGTCTACCACCTCATGCACAACGGTAACCTCCACGACGCCCTCTTGCGCTCTAAAACCCCTCACCTAAAGAGCTGGAAAAACCGCTTCTCCATCATCCTCGACATCGCCAGAGGCATCCACTACCTCCACTCGCTCGACCCCCCGGTCATCCACGGTGACATCAAACCCTCCAACATTCTCCTGGACAACACCTTCTCTGCAAAACTCGCCGACTTCGGTCTTGCGCGCTTAAAACCCCATGTTCAAGTCCAAGAGTTCAAAGCAAAGCGCGACGAGAAGAGAAGGGACGAGTCCGAGAGCGATGCTGGGTCGGAGTTAGAAACTGTGAGCGTCAAGACAGAGCAGTCGTTTGAAGGTAACACCGGGTCGGATTACGTGATGGATTGGATTGGGAAGGAGTTGAAGAAGGAAAGGCCGACGACGGTGGAGAAGGTTTCTTCTGGGTCGAGCAGTGGATTGGCGGAGAAGAAGAAAAGTAGGAAGAAATTGGAGTGGTGGGAGAAGATGAATGATAGTGGAGTTCCGAAGATGGAGAAGAGAAGGGCCGCGAGGGAATGGTGGAAGGAAGAGTATTCGGAAGAGCTTGCTAGGAAGACGAAGAAAAAGAAAACGAAGGAGAAGAAAAAGAGAAAGGGTGTTAACGGTGATGGTGATTTGGAGATAGATAATGGTGATGTAAATGTGTACAAGAGGGAGAAGAACCGGAGTAGGAAAAGTGGTGGAAGTGTAGATTCTTGGTTGAACGGTGATGTACATGGAGTTGGATGGAACAGCTACGATTCAGGGACTTGTAGCGGTGAAATAGTGGCCAAGAGTGGTGGTGTGAGTAGTACTCCGAGTATGAGGGGAACGGTTTTCTACGTGGCTCCTGAGTATGGATACAATGGAGATGTTTCTGAGAAGTGCGACGTGTACAGTTTCGGGGTTTTGTTGCTTGTTATTGTTTCTGGGAGGCGGCCACTTCAGGTGACAGGGTCGCCCATATCGGAGCTTCAACGTGCGAATCTGGTGTCTTGGGCGAGGGTATGTGGTCGGAGGGGAAAGCTTCTAGAAGTGGTGGATGAGGGTGTTGAGGGGTTGGACAAAGAGCAGGCTAGTCTGTGCGTGACGGTTGCGCTGGCTTGTTTGCTAAAGTCACCGACCCGTCGACCTTCCATGAAGGAGGTTCTGGGAATGCTAAGTGGGGAGCTGGAGCCTCCGCAGTTGCCGCGCAATAGTTTCCCCCTCAACTCCAGGAACCAGGGTCGGTGA 1674 0.543 MPSRQLSTSPPPSNRRILTPPVTSTASLCSLFFLLCLCFRKRKRTTPSSDSDSTPPHPFSYALLRRATNSFSTRLGHGGFGPVFAGTLAGDPVAVKLMDSASQQGEREFNNELFFASRLRSPSLVPAIGFSSDPKRRRFLLVYHLMHNGNLHDALLRSKTPHLKSWKNRFSIILDIARGIHYLHSLDPPVIHGDIKPSNILLDNTFSAKLADFGLARLKPHVQVQEFKAKRDEKRRDESESDAGSELETVSVKTEQSFEGNTGSDYVMDWIGKELKKERPTTVEKVSSGSSSGLAEKKKSRKKLEWWEKMNDSGVPKMEKRRAAREWWKEEYSEELARKTKKKKTKEKKKRKGVNGDGDLEIDNGDVNVYKREKNRSRKSGGSVDSWLNGDVHGVGWNSYDSGTCSGEIVAKSGGVSSTPSMRGTVFYVAPEYGYNGDVSEKCDVYSFGVLLLVIVSGRRPLQVTGSPISELQRANLVSWARVCGRRGKLLEVVDEGVEGLDKEQASLCVTVALACLLKSPTRRPSMKEVLGMLSGELEPPQLPRNSFPLNSRNQGR 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00574 557 MobiDBLite consensus disorder prediction 1 20 - -
Vian3g00574 557 SMART serkin_6 69 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00574 557 MobiDBLite consensus disorder prediction 229 260 - -
Vian3g00574 557 Pfam Protein kinase domain 418 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00574 557 MobiDBLite consensus disorder prediction 535 557 - -
Vian3g00574 557 Gene3D Phosphorylase Kinase; domain 1 57 144 - -
Vian3g00574 557 ProSiteProfiles Protein kinase domain profile. 69 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00574 557 Pfam Protein tyrosine and serine/threonine kinase 71 221 IPR001245 GO:0004672|GO:0006468
Vian3g00574 557 MobiDBLite consensus disorder prediction 229 243 - -
Vian3g00574 557 Coils Coil 329 349 - -
Vian3g00574 557 MobiDBLite consensus disorder prediction 278 297 - -
Vian3g00574 557 MobiDBLite consensus disorder prediction 338 358 - -
Vian3g00574 557 SUPERFAMILY Protein kinase-like (PK-like) 53 546 IPR011009 -
Vian3g00574 557 Gene3D Transferase(Phosphotransferase) domain 1 401 542 - -
Vian3g00574 557 MobiDBLite consensus disorder prediction 245 260 - -
Vian3g00574 557 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Vian3g00574 557 Gene3D Transferase(Phosphotransferase) domain 1 146 256 - -
Vian3g00574 557 PANTHER OS07G0586332 PROTEIN 259 546 IPR044576 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00574 Vian-Chr3 5721099 5722772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00574 412 534 Receptor kinase-like Gene Family AT3G58690 34.884 1.10e-11 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Vian3g00574 PK_Tyr_Ser-Thr 2.3e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00574 - - pvu:PHAVU_007G064200g 923.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01166 8 30177357 30179336 Vian3g00574 3 5721099 5722772 PCT