Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00561 ATGGCCACTCAAATCGAAAGCGACAATTCAACCCATACTTCTCCATCATCGCCGAAGAACACATACAAAGATCCAGATGATGGGCGGCAACGGTTTTTGCTTGAATTGGAGTTTGTTCAGTGCCTTGCCAATCCTACCTATATCCACTATTTGGCTCAGAATCGTTATTTTGAGGATGAAGCATTCATTGGATACTTAAAGTATCTTCAATATTGGCAGCGCCCTGAATATATTAAATTTATTATGTATCCTCATTGTCTTTATTTTCTTGAGCTGCTTCAGAATGCAAACTTTCGCAATGCAATGGCACATCCTATCAATAAGGAACTGGCACATAGACAACAATTCTACTTCTGGAAGAATTATAGGAACAATCGGCTAAAACACATTTTACCAAGATCACTTCCTGAACCTAGTGCCACATCTGCAGTTCCTGCTCCCCTTTCAACTCCAGCTCAGGCACCTGCATCTGCACTACCACCAGTACCTGCTACAAGCGTTGCTGTCACAGCAACACCCTCGCAAGCTCCTTCTCCTATGTCATACGGTATGCCCCCTGGCTCTGGTCTAGCTAAAAATGACATGAGGAATCCTACAGTTGACAATAGAAGGAAGAGAAAGTGA 624 0.4295 MATQIESDNSTHTSPSSPKNTYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPINKELAHRQQFYFWKNYRNNRLKHILPRSLPEPSATSAVPAPLSTPAQAPASALPPVPATSVAVTATPSQAPSPMSYGMPPGSGLAKNDMRNPTVDNRRKRK 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00561 207 MobiDBLite consensus disorder prediction 1 21 - -
Vian3g00561 207 MobiDBLite consensus disorder prediction 137 207 - -
Vian3g00561 207 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 1 207 IPR008831 GO:0003712|GO:0006355|GO:0016592
Vian3g00561 207 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 17 119 IPR038089 -
Vian3g00561 207 Pfam SOH1 30 122 IPR008831 GO:0003712|GO:0006355|GO:0016592
Vian3g00561 207 FunFam Mediator of RNA polymerase II transcription subunit 31 18 119 - -
Vian3g00561 207 MobiDBLite consensus disorder prediction 1 24 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Vian3g00561 Med31 4.7e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00561 K15153 - gmx:100818057 389.808