Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00558 ATGCAGCTTCTTCACTCCGACGAACCCGCGTCCGAGCGGCGCGAGTCGCCGGAGAAGCCCGAGGATTCTAGCACTTTCTCCGATTCTCTGGACTCCGTAACCGACGACAGCGCGGCTCTCGACGTCACCGGGAAGAGCGTGGAGTTTCCGGAGGCGGAGAACGCCGAGGACTCGGTGGAGAGCCTTTACGTGTACAAGAACATTTACAGTCTTATTCCGAAGTCGGTTTCGCGCCTAGCACAATTGCGAACGCTTAAATTCTTCGGAAATGAGATTAACCTGTTCGCGCCCGAGGTTGGGAACTTGACGGCGTTGGAGTGCTTGCAGATGAAGATTTCCTCGCCGGGGATCGGAGGCTTGCCGTTGCACTCGCTCCAGGGTTTGAAGGAACTCGAACTCTCCAAAGGACCTCCCAGAACGTCTGCTTTTCCGATTTTGACAGAGATTTCTGGTCTCCAGTGTTTGACTAAGCTTTCCATTTGTCATTTTTCCATAAGATACCTTCCTCCGGAGATTGGATGCTTGAAAAAACTGGAGTATCTTGATCTTTCGTTTAATAAAATGAAGACGTTGCCAGTGGAGATTAGTTACTTGAGTGGCTTGATATCCATGAAAGTTGCGAATAATAAATTGATGGAGCTGCCGTCAGCTATATCTTCTCTGTCAAGACTGGAGAGTTTGGACCTGTCGAATAATAAGTTGACTTCGTTAGGGTCCCTTGAACTTGCCTCCATGCATAGACTTAAGAAGTTAAATCTTCAGTGTTTTACATGGAGGGGCCGCATTGAAGGTGCCTTTGTGCATCCAAGAGCCAAGTACTCTTCTATGATTTCTTTTGCAGGTTGTCAGCATATCTCATCAACCATGCTAACAAGCTCCTCATCTAGTAGTAGATGTTTTGTATCCCGGAAGTCAGGTAAGCGGTGGAAAAGACGGTATTATTTACAGCAGAAAGCTCGTCAAGAGCGCTTGAACAATAGTAGGAAGTGGAAAGCTGTAGATCATGACCAGTTGTTGAGCAAGAAGATTCACAAAATTTCTGAACCAGGAAATTGTGATAGTCTTGATTCTGAAACTCGTTCAGAAATTGTATCAGAGAATGGGAACCTGGATAATAGTAAAAGAATATTTTCTGAACAAGCAATAAATGACAATGAAGTTGATAATGTTAACAATGATGAAGTAATTATTGAGAAGCGTTTTTCTGGGGAAGATTGCTGCACTACTGAAAGCAAAGATGAAAAGGATGCATGCTTGTGCTCCATAGAGAACAAGCAAAGTGAACAGGATGAAGTATCTTGTTTTGAACTTTTAGAGTGTGTCTCTAAATCAAAGAGACATTTAGACCGTGATCTTGATAATCCTAAACCGTGCAAGTCTAGAAAATCTATTAGTACTTGTTCATCATTGTCTAACAAGTACAGCAAAATCTCATTTTGTGGCATTGAAGACCATCTATCAGATGGATTTTATGATGCAGGACGAGATCGGCCATTTTTTCCTCTAGAGAGATATGAGCAAAATCAAAAAAGAGATGAAGAATTGGATGCTGTGTTGCTAGCTGCGCAGGCATTGGTCCATAATTTGAATCAGTTAAATGGTTTAAACAGACATGGGAACCAGGATGTGGTTGATAACTTGCGGAGAGCATCACTGCTTGCACTCTTTGTATCAGATCATTTTGGTGGCAGTGATAGAGGTGCTATCATAGAACAGACACGGAAATCTGTGTCTGGTTCAAACTATAATAAACCTTTTATCTGTACATGCTCGGTTGGAAGCAGCACCAGTATAAGGGCTTCCACCGAACCAGTTGTAAACACCATAGAAGATATTACTCTTTCTAAGATATGTGAGAAATCTCTGGACTCTATTAAAAAAAGGCGAAATTCAATCATAGTTCCAATTGGCTCTGTGCAGTATGGTGTATGCAGACACAGAGCTCTGCTTTTCAAGTATTTATGTGATCACATGGAGCCACCAATTCCTTGTGAGCTTGTCAGGGGTTACCTAGATTTTTCACCACATGCCTGGAATATTGTTATGATTAAGAGGGGTGCCAAGTGGGTTCGAATGCTGATTGATGCTTGTCGACCTCTTGATATAAGAGAAGAGAAAGATACTGAATACTTTTGCAGGTATATACCTCTTAATCGAACCACGATCCCTCTTTCTTCTAGAGGAACTCCAGATTCTGATTATTCTATTCCATCACTTACTGCATGTGATGAGCTTGAGACAAAAGCTTCAACTACTTTAATTAAATGCAAAATTGGATCAGTTGAGGCTGCAGCAAAGGTGCGTACTTTGGCAGATCAGGGGAGTTCGGCTGACAAAATTAAAAACTTTGAGTATAATTGTCTGGGAGAAATAAGAATTCTTGGTGCTTTAAAACACCCCTGCATAGTGGAAATGTATGGACACAAAATGTCATGTCAATGGTCTGTCTCAGCCGATGGTAATCCTGAACACCGTGTGTTAAGATCTGCCATTTTTATGGAGTATGTGGAAGGGGGCTCTTTAAAAAACTATCTGGAGAAGCTGTCAGAAACTGGAAAAACATATGTTCCTGTGGAGTTGGCTTTGCATGTTGCTAAAGATGTCTCATGTGCTTTGTCAGAGCTGCACTCGAGGCACATAATTCATCGTGACATAAAAAGTGAAAATATTCTGCTTGATTTGGATAGGAAGAGAGACAATGGAGCTCCCACTGTAAAGCTCTGTGATTTTGATAGTGCAGTGCCACTAAGATCAACTTTACATGCATGTTGTATTGCGCATGTGGGAACACCTCCTCCCTGTGTATGTGTTGGAACACCTAGGTGGATGGCTCCAGAGGTTATGCAGACTATAAGTTTAACTATAGGTCCAGGTCCTTTGATTTTGAAGCTCACTGATTTTGGAAAAGGATATTCTGTTTATGTCAACATGGACATATTTGCTGTTCCATTTCCCCCTTTTGTTGTGCTTAAAGGTGCAAGTGCACATGAAGCGGACATTTGGTCGTTTGGATGTTTACTTCTGGAGATGCTTACTTTGCAAATTCCATATTCTGGGCTTTCTGATTCACACTTCCTTGATAGTCTGCAGATGGGTAAACGACCACAGTTAACTGATGAGCTGGAGGCATTGAGTTCAATGGACGAACCCTCAATGATTCCATCGGGTGAAGAGATAGAAAAATCAGATCTTGAGGTTGACATGTTGAAATTCCTTGTTGATTTGTTTCACAAGTGCGTAGAAGAAAATCCTAACAAGCGTCCTACAGCTGAAGAAATCCATAAAATGCTGCTTGCACACACACACAAAGATCGTTTACAACTAGATCTCTTTCGGATAGTAAACGTGGAGATGAACATGAGTTCCAACCATTCCTCAATTGAGCCTATTTCCGCCAATTTTGAAAATTCAATGAAAGCGAAGAATGGAAATATCTTTTTGGCTTTAGATGCTGCTAAGCTTGCTTTACATGGGGTGGTGATGTTTTGCTACATCGGTATAACTGAAGAGATTGAGACCCCAAAGAACCAAATGGAACATGCTTTCTTCAAATCAAATGCGGACCACCTCCTCTGCCTTCGAGCCACCCTGTTTTCTTGCAAGCTTGGGGCATATATACATTGTGGACCATGA 3633 0.4211 MQLLHSDEPASERRESPEKPEDSSTFSDSLDSVTDDSAALDVTGKSVEFPEAENAEDSVESLYVYKNIYSLIPKSVSRLAQLRTLKFFGNEINLFAPEVGNLTALECLQMKISSPGIGGLPLHSLQGLKELELSKGPPRTSAFPILTEISGLQCLTKLSICHFSIRYLPPEIGCLKKLEYLDLSFNKMKTLPVEISYLSGLISMKVANNKLMELPSAISSLSRLESLDLSNNKLTSLGSLELASMHRLKKLNLQCFTWRGRIEGAFVHPRAKYSSMISFAGCQHISSTMLTSSSSSSRCFVSRKSGKRWKRRYYLQQKARQERLNNSRKWKAVDHDQLLSKKIHKISEPGNCDSLDSETRSEIVSENGNLDNSKRIFSEQAINDNEVDNVNNDEVIIEKRFSGEDCCTTESKDEKDACLCSIENKQSEQDEVSCFELLECVSKSKRHLDRDLDNPKPCKSRKSISTCSSLSNKYSKISFCGIEDHLSDGFYDAGRDRPFFPLERYEQNQKRDEELDAVLLAAQALVHNLNQLNGLNRHGNQDVVDNLRRASLLALFVSDHFGGSDRGAIIEQTRKSVSGSNYNKPFICTCSVGSSTSIRASTEPVVNTIEDITLSKICEKSLDSIKKRRNSIIVPIGSVQYGVCRHRALLFKYLCDHMEPPIPCELVRGYLDFSPHAWNIVMIKRGAKWVRMLIDACRPLDIREEKDTEYFCRYIPLNRTTIPLSSRGTPDSDYSIPSLTACDELETKASTTLIKCKIGSVEAAAKVRTLADQGSSADKIKNFEYNCLGEIRILGALKHPCIVEMYGHKMSCQWSVSADGNPEHRVLRSAIFMEYVEGGSLKNYLEKLSETGKTYVPVELALHVAKDVSCALSELHSRHIIHRDIKSENILLDLDRKRDNGAPTVKLCDFDSAVPLRSTLHACCIAHVGTPPPCVCVGTPRWMAPEVMQTISLTIGPGPLILKLTDFGKGYSVYVNMDIFAVPFPPFVVLKGASAHEADIWSFGCLLLEMLTLQIPYSGLSDSHFLDSLQMGKRPQLTDELEALSSMDEPSMIPSGEEIEKSDLEVDMLKFLVDLFHKCVEENPNKRPTAEEIHKMLLAHTHKDRLQLDLFRIVNVEMNMSSNHSSIEPISANFENSMKAKNGNIFLALDAAKLALHGVVMFCYIGITEEIETPKNQMEHAFFKSNADHLLCLRATLFSCKLGAYIHCGP 1210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00558 1210 ProSiteProfiles Leucine-rich repeat profile. 223 244 IPR001611 GO:0005515
Vian3g00558 1210 Pfam Protein kinase domain 985 1095 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00558 1210 Pfam Protein kinase domain 780 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00558 1210 Gene3D Ribonuclease Inhibitor 41 284 IPR032675 -
Vian3g00558 1210 PRINTS Leucine-rich repeat signature 178 191 - -
Vian3g00558 1210 PRINTS Leucine-rich repeat signature 221 234 - -
Vian3g00558 1210 SMART serkin_6 743 1099 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00558 1210 ProSiteProfiles Protein kinase domain profile. 747 1097 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00558 1210 Gene3D Transferase(Phosphotransferase) domain 1 963 1128 - -
Vian3g00558 1210 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 105 1104 - -
Vian3g00558 1210 SMART LRR_bac_2 221 240 - -
Vian3g00558 1210 SMART LRR_bac_2 175 194 - -
Vian3g00558 1210 SMART LRR_bac_2 198 217 - -
Vian3g00558 1210 ProSitePatterns Serine/Threonine protein kinases active-site signature. 880 892 IPR008271 GO:0004672|GO:0006468
Vian3g00558 1210 SMART LRR_typ_2 221 244 IPR003591 -
Vian3g00558 1210 SMART LRR_typ_2 79 102 IPR003591 -
Vian3g00558 1210 SMART LRR_typ_2 175 198 IPR003591 -
Vian3g00558 1210 SMART LRR_sd22_2 221 242 - -
Vian3g00558 1210 SMART LRR_sd22_2 175 200 - -
Vian3g00558 1210 SUPERFAMILY Cysteine proteinases 640 698 IPR038765 -
Vian3g00558 1210 FunFam Leucine-rich repeat protein kinase family protein 785 955 - -
Vian3g00558 1210 ProSiteProfiles Leucine-rich repeat profile. 177 198 IPR001611 GO:0005515
Vian3g00558 1210 Pfam Ethylene-responsive protein kinase Le-CTR1 613 686 - -
Vian3g00558 1210 SUPERFAMILY Protein kinase-like (PK-like) 780 1101 IPR011009 -
Vian3g00558 1210 SUPERFAMILY L domain-like 59 262 - -
Vian3g00558 1210 Gene3D Transferase(Phosphotransferase) domain 1 752 955 - -
Vian3g00558 1210 MobiDBLite consensus disorder prediction 1 25 - -
Vian3g00558 1210 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00558 Vian-Chr3 5536835 5548557 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00558 770 1103 MAP Kinase Kinase Kinase AT5G50180 25.970 4.54e-19 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-2 Vian3g00558 Pkinase 1e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00558 - - gmx:100811118 1711.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00558 3 5536835 5548557 Vian3g00558 3 5536835 5548557 ECH