Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00554 ATGGAGGAAGAGAGTGAATGCTTCGAGTGCCTCCAACTTCGAATAAAGTCGGATTTCTCGGAGCAAGTCTTCTTCAATTATGCCATCTCTAATTCTGCTTTTCCTTTCGGATCCTCAGCTATCATTTCTGGTACAACTGATGTAGAGGCTTCGGGCGGTCAATTTATATTGCAATACATGCCGAGTCGTGATAAGAATTGTTTTATCAATTATGTAAATGAATATAGTTTGGACAGTGGTGAAATTACTACTGGGAGTGGTGATCCTGATATTGGTGGAAGTAAAAATGATGTTATTAAGGGTAGAATTACTTCATCAGATGATTCTGACTGTGACAAAGCTTTTTCTGGAAACACAAATTGTAGTCATTCTGGAAGGTTTTCTTGCTTGAGGACAATCACCTCACTCTTGCCGATTGCTCATGTGGGAAATTCTTCCTATTCTACGTTTCAAAAGGTGTCCTCTGATTTCTTGTCTGGGCTAATCGAAGACCATGTCTTAAATTCACTTGATCTCTTCATTGAAGAGAAAGGATCTGGACGGGACAGTATAAATTTCCTGGGTTTAATTGGGTTGCCATCATTTGAAGAGGATGCTTTGCCAGGCTCTTTGAGGCATCCTAACATAGCTCCAGTCCTTGCAATTTTTAAAACATCCGATCATGTTAATGTGGTGCTTCCAAAGACTCCATACAACTTGGAAAGTATTCTTCATTTTAATCCCAATTCCTTAAAATCTGATTGGCATAGAAGATTTCTTATATATCAACTACTCTCAGCCTTATCGTACCTACATGGTTTAGGGGTTTCTCATGGTAATATATGCCCATCCAATATCATGTTGACTGATTCGTTATGGTGTTGGCTGAGATTATGGAATGAGCCCGTATTGGAATCTAATTTAACTTTGCAGGAGAGTGAAAGCGTTAATTCTGAACCTGCAAGAATTGGTTGTTGTAATGTTGGTTGTCATTCTTATGGCCTTTATGCTGATCTAAAGCTTTCTCCAACAATAGATTGGCATGCTTGCTTTCAGCAGTGGTGGAGAGGAGAACTAAGTAATTTTGAATATTTACTCATCTTAAACAGATTAGCAGGAAGAAGGTGGGGGGACCATACATTTCATCCAGTAATGCCTTGGGTAATTGATTTTAGCTCAAAACCTGATGATAATTGTGATGTAGGGTGGCGCAACTTGAGCAAGAGTAAATGGCGCTTGGCAAAAGGTGATGAACAATTGGATTTCACATATTCAACATCTGAAATCCCTCATCATGTATCAGATGAATGTCTGTCTGAATTGGCTGTCTGCAGTTATAAAGCAAGAAGACTGCCTTTGAGTGTTCTGAGAATGGCTGTTCGTTCTGTGTATGAACCTAATGAGTATCCTTCCACAATGCAGAGGCTCTATCAATGGACTCCCGATGAATGCATTCCAGAGTTTTACTGTGATGCTCAAATTTTTATATCAATACATGATGGTATGGCTGATTTGGCTGTACCCTCTTGGGCAGAGAGTCCTGAGGATTTCATTAAATTGCATTTTGATGCATTAGAAAGTGATAGGGTGTCATTTCAGCTCCATCATTGGATAGATATAACCTTTGGTTACAAAATGTCTGGCCAGGAAGCTATCGCTGCTAAGAATGTTATGCTTCCTCTATCAGAACCCTCAATGCCAAGATCAACAGGACGTCGTCAGCTCTTTACACAACCACACCCCATACGTCATGCCACTACCAAAACAAAACGTCACAGTTCCAATAAATATGCCAAAGTTTGGAGTCAGGCATATGAAATGCACCGAGAGACATCTCTTCTAGCTGGAACTGCTTATCTACAAGAACTAGAGCAAGCATCTAAATTTTCTGAACATGCTAGGCATTTGAATGCCTGTTACCATTATCCCTCAAATCAAATGACGGGGAAGAACATCTCATCTTTGAGAGATCCAACAACAAAGACATTTAGTGAAAATATAAGCAAACTATCTTTGATTGACAGAAATTACCAGGTACCTTATAAAATGAATCTAATTTCTTTTCTTCAACATATGAAAGAGGAAGATGAAGGCTCCTTAGGGTATCCAGACTTGCTACTCTGGAAGCAGAAATTATCTTCTTCAAGACTTTGCTCTGAAGATGTTGCTGGGGACATATTTTCTATTGGTTGTCTCTTGGCTGAACTTCATCTTTCCAGGCCACTCTTTGATCCAATCTCATTGTCGATATACTTGGAAGATGGAACCTTTCCAGGATTTCTGCAGGATCTACCTCCTAATATTAGATTACTTGTTGAAGCATGCATCCAAAAGGATTGGACGAGGAGGCCTTCTACAAAATTTCTACTGGAATCACCTTATTTTCCAAAGAGTGTCAAGTCCTCCTACTTGTTTCTTGCTCCACTTCAGCTTGTAGCTAAAGACGAAACCCGTCTTCGTTATGCTGCAAATCTTGCAAAGTGTGGAGCCCTCAGGGAAATGGGTGCATTCGCAACTGAAATGTGCACTACTTATTGCTTACCGCTTATTGTGAATGCTGTGAGTGATGTTGAAGCTGAATGGGCATATATGCTTCTGAAGGAATTCATGAAATGCTTAACAGTGCCAGCAGTTGCACTTCTACAAGATTCATTTGTGAGGGAAATATGGAATCAAGTTGGTAAACAAGCATACCTGGAAACTATTCATCCATTGGTCTTGTCAAACTTGTACAATTCTCCAGATAAAAGTTCAGCTGCCTCTGCTTCAGTGCTTCTAATCAGTTCTAGCGAGGAGCTTGGAGTACCTATTACCATCCATCAGACTATCTTGCCTCTTGTTCACTGCTTTGGGAAAGGACTATGTGCTGATGGCATTGATGTGCTGGTCAGAATTGGTGGCATTTTTGGGGAATTGTTTATTGTCAAACAGATGGTACCTTTACTCAAAAATGTTGTTCGTTCCTTCATTGATGTGTCATGCATGAATAAGCCTGATCCTGTCCAGAGTTGGACTGCTTTGGCACTTATTGATTGCATGATGACTTTAGATGGCCTTGTAGCTTACCTGACAGAAGAGGTCATTGTAAAGCAGCTTCTTGAAGATCTAAGTTGCATACACATAGGGGTTCTTATGCAGAAACATATGGACATTGCAGTGCTTCAGATTGCTGCCTCTACTCTTTTTGGAATTTGTCAGCGGATTGGAGCAGATTTAACAGCATTGCATATTCTTCCAAAACTTAAAGAACTATTTGATGAGCTGGCTTTCTCCCAGGAAGTTTCTAAAGGTTCAACTTCTGTTAGCAAAAACTTGAAGGCTAGCAAAATAAAAATTGGAGGGGACTTGCTTATTGAAAGTCGTATGGATCTAGTGTTGGTCCTCTATCCTTCCTTTGCATCTCTTCTTGGGATAGAGAAACTTCGTCAATGCTGTGCTACTTGGTTGATTCTTGAACAGTATCTTCTACATCATCATAATTGGAAGTGGGAATATGCAGGAGAATCATCAAAAAATGGTTCAGAAATTATTCTTGCTAGAAGACCGGTAATATCCCAAGGATTTACATCTGAATACAATCCTGCAAAGCTGTTACTTAATGGAGTTGGATGGTCAATTCCACAATCCCAAGGAAGTAGAAGTGCCAGAAATTTGATTCCTCAAAGACGACCATTTAAAGTTCATCAAAGTCCAGTAGTAGTGCATGAAGGAATGACATACCAAATGAACCAAGAACCCTGGTTTTGGTTCCCTAGTCCAGCCACCATCTGGGATGGGCCTGAATTTCTTGGGAGGGTGGGGATTCAGAAAGATGATCTGCCATGGAAGATCAGAGCATCTGTTATATACTCTATACGCGCACATCATGGAGCTCTAAGGTCTCTGGCTGTTAACCAAGATGAATGCACTGTTTTTACTGCTGGAATTGGTCAAGGATACAAGGGAACTGTTCAGAAATGGGAATTGAGCCGAACTAACTGTTTGTCCGGCTATTATGGCCATGAGGAGGTTGTGAATGATATTTGCGTCTTATCATCAAGTGGAAGAGTGGCATCTTGTGATGGAACAATTCACATTTGGAATAGCCAAACTGGGAAGCAAATATTAGTATTTGCTGAGTCGCAAACAGAATCTAGCCATCCTACAAGCCATCCATCCTCTGGATCAAAGATAAATAGTGACCAGGCAAATGTGCTGAATTTGAATACACTATCAAATGGAATATTGTCTAGTGCTTTCGATTCAAGTCTTTATACTTGTATGCATCAATTATACTCCACTGAAACTCTTGTAGTTGGCACTGGAAATGGTTCTCTGAGGTTCATTGATGTTTCTCGAGGTCAAAAGCTTCATATCTGGAGAGGCGAATCTACTGAATCTAGTTTTCCTTCACTTATTTCTGCCATCTGCTCTACTGGCTCTGACAAGATGCAAGCAGGTGGAATTTCCTCTTCGCCGTCTTTTATTGCAGCTGGGCTAAGTTCTGGGCACTGTAAATTATTTGATGCTAAGAGTGGAAATGTCATTAGCTCTTGGCGAGCTCACGATGGATACGTGACAAAGTTGGCAGCACCGGAAGAACATCTGCTCATTTCCAGCTCTCTGGACAGAACTTTACGAGTCTGGGACATAAGAATGAATTTGCCGTCGCAGCCCGTTATTTTCAGAGGTCATTCAGATGGTATATGCAGCTTCTCCGTTTGGGGCCATGATGTTATTTCGATTTCCCGGAGTAGGATTGGGCTTCTCTCCTTGTCAAAATCTGCCAATGAAGCAGATGGGCAGCACCATATTATCCCCCAGAGACTCTACGTTTCTGATAACGGTCAGAGAAGCTTGTCAGCGTTATCAAGTATTAGTATACTTCCATTCTCCCGATTGTTTCTCATTGGAACCGAAGATGGTTATCTGAGAATCTGTTGTTAA 4905 0.4071 MEEESECFECLQLRIKSDFSEQVFFNYAISNSAFPFGSSAIISGTTDVEASGGQFILQYMPSRDKNCFINYVNEYSLDSGEITTGSGDPDIGGSKNDVIKGRITSSDDSDCDKAFSGNTNCSHSGRFSCLRTITSLLPIAHVGNSSYSTFQKVSSDFLSGLIEDHVLNSLDLFIEEKGSGRDSINFLGLIGLPSFEEDALPGSLRHPNIAPVLAIFKTSDHVNVVLPKTPYNLESILHFNPNSLKSDWHRRFLIYQLLSALSYLHGLGVSHGNICPSNIMLTDSLWCWLRLWNEPVLESNLTLQESESVNSEPARIGCCNVGCHSYGLYADLKLSPTIDWHACFQQWWRGELSNFEYLLILNRLAGRRWGDHTFHPVMPWVIDFSSKPDDNCDVGWRNLSKSKWRLAKGDEQLDFTYSTSEIPHHVSDECLSELAVCSYKARRLPLSVLRMAVRSVYEPNEYPSTMQRLYQWTPDECIPEFYCDAQIFISIHDGMADLAVPSWAESPEDFIKLHFDALESDRVSFQLHHWIDITFGYKMSGQEAIAAKNVMLPLSEPSMPRSTGRRQLFTQPHPIRHATTKTKRHSSNKYAKVWSQAYEMHRETSLLAGTAYLQELEQASKFSEHARHLNACYHYPSNQMTGKNISSLRDPTTKTFSENISKLSLIDRNYQVPYKMNLISFLQHMKEEDEGSLGYPDLLLWKQKLSSSRLCSEDVAGDIFSIGCLLAELHLSRPLFDPISLSIYLEDGTFPGFLQDLPPNIRLLVEACIQKDWTRRPSTKFLLESPYFPKSVKSSYLFLAPLQLVAKDETRLRYAANLAKCGALREMGAFATEMCTTYCLPLIVNAVSDVEAEWAYMLLKEFMKCLTVPAVALLQDSFVREIWNQVGKQAYLETIHPLVLSNLYNSPDKSSAASASVLLISSSEELGVPITIHQTILPLVHCFGKGLCADGIDVLVRIGGIFGELFIVKQMVPLLKNVVRSFIDVSCMNKPDPVQSWTALALIDCMMTLDGLVAYLTEEVIVKQLLEDLSCIHIGVLMQKHMDIAVLQIAASTLFGICQRIGADLTALHILPKLKELFDELAFSQEVSKGSTSVSKNLKASKIKIGGDLLIESRMDLVLVLYPSFASLLGIEKLRQCCATWLILEQYLLHHHNWKWEYAGESSKNGSEIILARRPVISQGFTSEYNPAKLLLNGVGWSIPQSQGSRSARNLIPQRRPFKVHQSPVVVHEGMTYQMNQEPWFWFPSPATIWDGPEFLGRVGIQKDDLPWKIRASVIYSIRAHHGALRSLAVNQDECTVFTAGIGQGYKGTVQKWELSRTNCLSGYYGHEEVVNDICVLSSSGRVASCDGTIHIWNSQTGKQILVFAESQTESSHPTSHPSSGSKINSDQANVLNLNTLSNGILSSAFDSSLYTCMHQLYSTETLVVGTGNGSLRFIDVSRGQKLHIWRGESTESSFPSLISAICSTGSDKMQAGGISSSPSFIAAGLSSGHCKLFDAKSGNVISSWRAHDGYVTKLAAPEEHLLISSSLDRTLRVWDIRMNLPSQPVIFRGHSDGICSFSVWGHDVISISRSRIGLLSLSKSANEADGQHHIIPQRLYVSDNGQRSLSALSSISILPFSRLFLIGTEDGYLRICC 1634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00554 1634 PANTHER GH12955P 3 1634 - -
Vian3g00554 1634 SUPERFAMILY Protein kinase-like (PK-like) 202 289 IPR011009 -
Vian3g00554 1634 ProSiteProfiles BEACH domain profile. 332 601 IPR000409 -
Vian3g00554 1634 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1505 1538 - -
Vian3g00554 1634 Pfam Beige/BEACH domain 345 558 IPR000409 -
Vian3g00554 1634 CDD Beach 345 576 IPR000409 -
Vian3g00554 1634 Pfam Protein kinase domain 200 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00554 1634 SMART WD40_4 1599 1634 IPR001680 GO:0005515
Vian3g00554 1634 SMART WD40_4 1317 1354 IPR001680 GO:0005515
Vian3g00554 1634 SMART WD40_4 1387 1436 IPR001680 GO:0005515
Vian3g00554 1634 SMART WD40_4 1271 1314 IPR001680 GO:0005515
Vian3g00554 1634 SMART WD40_4 1439 1495 IPR001680 GO:0005515
Vian3g00554 1634 SMART WD40_4 1498 1536 IPR001680 GO:0005515
Vian3g00554 1634 Gene3D BEACH domain 336 584 IPR036372 -
Vian3g00554 1634 ProSitePatterns Trp-Asp (WD) repeats signature. 1523 1537 IPR019775 -
Vian3g00554 1634 SUPERFAMILY BEACH domain 324 576 IPR036372 -
Vian3g00554 1634 SUPERFAMILY Protein kinase-like (PK-like) 714 789 IPR011009 -
Vian3g00554 1634 SUPERFAMILY WD40 repeat-like 1274 1632 IPR036322 GO:0005515
Vian3g00554 1634 Gene3D - 1268 1468 IPR015943 GO:0005515
Vian3g00554 1634 ProSiteProfiles Protein kinase domain profile. 136 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00554 1634 Gene3D - 1469 1634 IPR015943 GO:0005515
Vian3g00554 1634 Gene3D Transferase(Phosphotransferase) domain 1 696 796 - -
Vian3g00554 1634 Gene3D Transferase(Phosphotransferase) domain 1 196 293 - -
Vian3g00554 1634 ProSiteProfiles Trp-Asp (WD) repeats profile. 1505 1538 IPR001680 GO:0005515
Vian3g00554 1634 Pfam WD domain, G-beta repeat 1500 1536 IPR001680 GO:0005515
Vian3g00554 1634 Pfam WD domain, G-beta repeat 1319 1354 IPR001680 GO:0005515
Vian3g00554 1634 SMART Beach_2 344 576 IPR000409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00554 Vian-Chr3 5502130 5511138 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDKL-Cr Vian3g00554 Beach 2.6e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00554 K17601 - gmx:100809116 2959.47