Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00549 ATGAATCCTCAAGGTCGAGTGAAGGAAGAGTTTCTCGGAGAAAGTTCTTCCTTTTATGGTGGCTATGATCCGCCCCCGATAATGATTGTTCCTCAACCGGTTGAGGGGCTTCATGAAACTGGTCCTCCGCCATTCCTAACAAAAACGTACGACATTGTTGATGACCCTTCCACTGACCATATAATTTCCTGGAGCAAGGGGAACAATAGCTTCATTGTGTGGGATCCACAGGCCTTTTCCGTGACCCTTTTGCCCAGATTCTTCAAGCACAACAATTTCTCCAGTTTTGTCCGGCAACTCAACACCTATGGGTTTAAAAAGGTTGATCCAGATAAGTGGGAGTTTGCTAATGAGATGTTTCTCAGAGGGCAAAGGATTCTTCTGAAGAGCATTAGAAGGCGGAAAACAAATCACCAATCTCATGCGATGCAGCAAGCGGTGGATCCTTGTGTTGAGGTGGGGCTGTTTGGATTAGATGGAGAAGTTGATAGGTTGAAGCGTGACAGGCAAGTTCTTATGGCGGAGTTGGTGAAACTCAGACAACAGCAACAGAATACTAGAGTTCACATTCAAGCAATGGAAGGAAGGCTTAAAAGGACTGAGCAGAAACAGCAGCAGACGATGAATTTCTTAGCCAGGGCAATGCAGAATCCCAACTTCGTGCAACAATTGGTTCAGCAAAAGGAGCTTAGAAAGGAGCTCAAGGAAGCTTTTTCTAAGAAGAGGTGTCTTGATCAAGGGCCTAGTAATGTTGTTGAAGTAGGAGAGTTGGCTTGCGGTGAAGAGTACTCAAGTTTGGTTAAACTTGAAGCACAAGTGTTGGATTTTGAGGTACCAGATATTGACCTTGGTTTGAATCTGGGGGAGCAAATTGGAAGCCAGAAGAGAATGGAGGGAGATTATGTTCAAGTTGAAAGTATGGATAAAGATATTGATGAAGTGTTTTGGCAAGATTTGCTGAATGAGGGCATTGAAGAACAAGGTGTAATGGGTGTAGATGTATTGGCTCAGCAACTTGGTTATTTGGCCTCAAGGTCCAAATAG 1044 0.4416 MNPQGRVKEEFLGESSSFYGGYDPPPIMIVPQPVEGLHETGPPPFLTKTYDIVDDPSTDHIISWSKGNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNTYGFKKVDPDKWEFANEMFLRGQRILLKSIRRRKTNHQSHAMQQAVDPCVEVGLFGLDGEVDRLKRDRQVLMAELVKLRQQQQNTRVHIQAMEGRLKRTEQKQQQTMNFLARAMQNPNFVQQLVQQKELRKELKEAFSKKRCLDQGPSNVVEVGELACGEEYSSLVKLEAQVLDFEVPDIDLGLNLGEQIGSQKRMEGDYVQVESMDKDIDEVFWQDLLNEGIEEQGVMGVDVLAQQLGYLASRSK 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00549 347 FunFam Heat shock transcription factor 1 38 135 - -
Vian3g00549 347 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 31 241 IPR027725 -
Vian3g00549 347 Coils Coil 162 182 - -
Vian3g00549 347 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian3g00549 347 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian3g00549 347 PRINTS Heat shock factor (HSF) domain signature 45 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian3g00549 347 Pfam HSF-type DNA-binding 45 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian3g00549 347 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian3g00549 347 SMART hsfneu3 41 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian3g00549 347 SUPERFAMILY "Winged helix" DNA-binding domain 41 134 IPR036390 -
Vian3g00549 347 Gene3D - 37 136 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00549 Vian-Chr3 5465651 5467209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00549 25 346 HSF AT3G22830 53.444 2.92e-123 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vian3g00549 HSF_DNA-bind 1.4e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00549 K09419 - gmx:100809515 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00125 10 1062438 1065152 Vian3g00549 3 5465651 5467209 PCT