Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00545 ATGAACGTCGGCGGAACCGCCACCTTCCGATCCATCCTCGACAAGCCCCTCAACCAACTCACGGAGGATGACATTTCTCAGCTCACTCGCGAAGACTGTCGCAGATTCCTCAAAGAAAAAGGGATGCGCAGGCCTTCATGGAACAAATCGCAGGCGATCCAACAGGTCATTTCCCTCAAAGCGCTTCTCGAACCTTCCGACGATGATTCCCCTCCTCCTCCTCCCCCCATGCACCACCATCCTCATGCTCCTCAACCTCAAGCCAATTTGACTCAGCCTCCGCCCAAGGCCCCTCCTCCTGAGGAACCCGCCTTTCTCGCCGCCGACGACATTCAGAAATCTGCCTCTTCTGGGGAAAAACCTACGGAGACTAATGACACCAACACCAACGCTAACGTTGCTAGCCCCAGGGGCTGTGCTACTAGTGGATCAATTGGCCAAATGACAATTTTCTATTGTGGTAAGGTGAACGTCTATGATGGAGTCCCACCTGATAAGGCACGGGCAATCATGCAGCTTGCTGCAAGTCCTGTCCAGTTTACTCAGGATGATCCTTTACATGGACATGCATCAGCTTGGTCTTCTCCTTGCCACTTACCGATGGATAAGGATGTCCTCATCCCTGTTGATACAGCTATCCTTCAGGTTGCTCAAGCAGGTAATAAGATGGTGGAATATCCTCTGCAATACAGAGAGAAAGGGAGCCTAACTCGTGATGCTGATATAGATGGTCAAGCAAGCAGAAAAGTGTCATTGCAGCGATATCGTGAAAAGCGTAAGGACAGGGGAAGATTTAAAGGCAAGAAATTGACTGGAATAACTTCATCTAACTTCGAGATGTATTTGAACCTTCCAGTGAAGGTCCATGCCTCAAATGGGAATTCAAGCCGCAGTAGCACTAGCTCTCCACCACAGCCTAGAGTGCCTCTAGCTTCCAGTGGTTCAGCTGACAACCAGCTCAAAGTTGCCCTTCCCATTGATCTCAATGACAAAGATGTTCAAGAATGCTAA 1011 0.4975 MNVGGTATFRSILDKPLNQLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQVISLKALLEPSDDDSPPPPPPMHHHPHAPQPQANLTQPPPKAPPPEEPAFLAADDIQKSASSGEKPTETNDTNTNANVASPRGCATSGSIGQMTIFYCGKVNVYDGVPPDKARAIMQLAASPVQFTQDDPLHGHASAWSSPCHLPMDKDVLIPVDTAILQVAQAGNKMVEYPLQYREKGSLTRDADIDGQASRKVSLQRYREKRKDRGRFKGKKLTGITSSNFEMYLNLPVKVHASNGNSSRSSTSSPPQPRVPLASSGSADNQLKVALPIDLNDKDVQEC 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00545 336 ProSiteProfiles Tify domain profile. 141 176 IPR010399 -
Vian3g00545 336 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 10 286 IPR040390 -
Vian3g00545 336 MobiDBLite consensus disorder prediction 239 268 - -
Vian3g00545 336 MobiDBLite consensus disorder prediction 62 139 - -
Vian3g00545 336 Pfam Jas motif 245 262 IPR018467 -
Vian3g00545 336 MobiDBLite consensus disorder prediction 67 102 - -
Vian3g00545 336 SMART tify_2 141 176 IPR010399 -
Vian3g00545 336 MobiDBLite consensus disorder prediction 115 139 - -
Vian3g00545 336 MobiDBLite consensus disorder prediction 290 319 - -
Vian3g00545 336 Pfam tify domain 147 175 IPR010399 -
Vian3g00545 336 MobiDBLite consensus disorder prediction 290 323 - -
Vian3g00545 336 MobiDBLite consensus disorder prediction 239 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00545 Vian-Chr3 5435350 5440567 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00545 1 291 Tify Gene Family AT4G14720 48.197 5.34e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vian3g00545 tify 9.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00545 - - gmx:100813937 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00545 3 5435350 5440567 Vian3g00545 3 5435350 5440567 ECH