Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00541 ATGGCTGGAAGGTTGCCTGGTGTTGGGTTGCTTGCAAGGAAGAGAGCAGAGAGCAATCACAGACATGAAAATCGACACAACTATTACCTAAAGGAATCCCTCCACCCACCTTCCATTCCTCTCACTGTCTTAGATGAAACTGCTCTCAAGGCCAGGCAGAGGCTTCACCACAAGCTTGGACACTTCTTTTCCTCCTACAGATCAGGTGAGAATCCGAGAAAAAAAGAGGGAAAAGTGAGGGAAAACAGTAACCAGAAGAAGGACGGAGGATTAGGTCGGAAATTATTAGAGAGTTCGTGGTTATTGCGTGGCAACAAGGTTAAGGAAGAGAGAAAAGTGTGTGCTGTTTGCCTTGAAGAGTTGGGAGAAGAACAACATGTTATGAACCTTTCATGCTCTCACAAGTATCATTCTGCATGTCTTCTTCCATGGCTTGCTGCTCATCCCCACTGCCCTTATTGTCGAACTCCAGTACAACTCTGA 483 0.4596 MAGRLPGVGLLARKRAESNHRHENRHNYYLKESLHPPSIPLTVLDETALKARQRLHHKLGHFFSSYRSGENPRKKEGKVRENSNQKKDGGLGRKLLESSWLLRGNKVKEERKVCAVCLEELGEEQHVMNLSCSHKYHSACLLPWLAAHPHCPYCRTPVQL 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00541 160 SMART ring_2 114 154 IPR001841 -
Vian3g00541 160 MobiDBLite consensus disorder prediction 68 91 - -
Vian3g00541 160 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 46 156 - -
Vian3g00541 160 ProSiteProfiles Zinc finger RING-type profile. 114 155 IPR001841 -
Vian3g00541 160 MobiDBLite consensus disorder prediction 64 91 - -
Vian3g00541 160 Pfam Ring finger domain 113 155 IPR001841 -
Vian3g00541 160 CDD RING-H2_PA-TM-RING 113 155 - -
Vian3g00541 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 159 IPR013083 -
Vian3g00541 160 MobiDBLite consensus disorder prediction 1 25 - -
Vian3g00541 160 SUPERFAMILY RING/U-box 113 158 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00541 106 158 C3H Transcription Factor Family AT1G49850 41.509 6.53e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00541 - - gmx:100527548 273.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00541 3 5373686 5374612 Vian3g00541 3 5373686 5374612 ECH