Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00540 ATGGGGAAGACGGGCAAATGGCTTAGAAACTTGTTGACCGGTAAGAAAGACAAGGAAAAAGAGAAGGAAAAATCTACATCTAACCTGAATTTTGCTTCAAATGGAACAGAAAACTCAGCCACTCCAACTTCCACAACCCCAAAGGAGAAAAAGAGATGGAGTTTCAGAAGATCATCAGCCACTTCCACAGCCACACTAGTATCAGTTTCCAAGGAATTGAATTTTGTAGAACCAACTGTCACTGCTTCGCAGACAGTGCAAGCTGACACGGATGATCAGAATGAGCAAAGGAAGCATGCCATGGCTGTGGCTGCTGCCACCGCAGCAGCAGCTGATGCTGCGGTGGCAGCTGCTGAGGCTGTAGCTGTTGTGATCCGTTTGACTTCTGCTTCCAATGCAACATCTAAAAGCATTAAAGAGGCTGCTGCCATTAAAATCCAATCAGTCTTTCGGTCTCATTTGGCAAGGAAAGCATTGTGCGCTCTAAGAGGACTGGTGAAGTTGCAGGCACTGGTAAGGGGTCATTTGGTGAGAAAACAGGCCAAGGAAACACTGAGATGCATGCAGGCTTTGGTGACGGCACAAGCTAGAGCTCGTATTCAGAGGATCCGAATGGGTTCAGAAGGAATTCCTAATCAACAACAAAGAAAAGCCACAGATGATGATCTGTTCAGGCAAATATATAATGAAATGGAGAGAGGCTTGGAAGACAATATCAAGATTGTTGAGATGGATGTGGGTGAAACAAAAAGTGATTGCAGAAGTAGAAGCAGCAGTGTATATCATCATGGGCATCAAGAACAGCATGACCATAGATTTTCCACACATTATTCAACAAATGGTTTCTACTCAAAGGAAGAAAACTACAAGGTGTCACCAGCTCCATCAGCATTGACAGAGTTGAGCACAAGAGAATGCAGTGGCCATTTTGAGGACTGTTTCAGCACAGCCCAAAGCAGCCCTCAGTTCCACTCTGCTGTGTCAAGAACAGAAAATTCAAAGCACCTTTTTTCTTTTCCAAGGCCAGCTTATGCAGAGTCTATGTGCGATGACTACCCTCTGTTTCCAAATTACATGGCTAACACTGAATCATCAAGGGCCAAAGTCAGATCGCATAGTGCACCGAAACAAAGACCCGATTCATTTGAGAGGCAACCAAGCCGCCGAAGAGCTTCAGTAGAGGGAAGAAATGTCCCAAGGCCAATTAGGATGCAAAGGTCATCTTCACATGTGAGTGCCACTGCTCAAAACTATCAATATCCTTGGTCAATCAAGCTTGACAGATCCGCAGTTTCACTCAAAGACAGCGAGTGTGGCTCTGCAAGTACAGTGCTCACTAACACTAATTATTGCAGATCTCTTGTTGCATTTGACCCACGTGGAGATAGGTTAAGGATTTTCACTTATTCTTATTAG 1416 0.4463 MGKTGKWLRNLLTGKKDKEKEKEKSTSNLNFASNGTENSATPTSTTPKEKKRWSFRRSSATSTATLVSVSKELNFVEPTVTASQTVQADTDDQNEQRKHAMAVAAATAAAADAAVAAAEAVAVVIRLTSASNATSKSIKEAAAIKIQSVFRSHLARKALCALRGLVKLQALVRGHLVRKQAKETLRCMQALVTAQARARIQRIRMGSEGIPNQQQRKATDDDLFRQIYNEMERGLEDNIKIVEMDVGETKSDCRSRSSSVYHHGHQEQHDHRFSTHYSTNGFYSKEENYKVSPAPSALTELSTRECSGHFEDCFSTAQSSPQFHSAVSRTENSKHLFSFPRPAYAESMCDDYPLFPNYMANTESSRAKVRSHSAPKQRPDSFERQPSRRRASVEGRNVPRPIRMQRSSSHVSATAQNYQYPWSIKLDRSAVSLKDSECGSASTVLTNTNYCRSLVAFDPRGDRLRIFTYSY 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00540 471 Pfam IQ calmodulin-binding motif 141 159 IPR000048 GO:0005515
Vian3g00540 471 Pfam IQ calmodulin-binding motif 166 182 IPR000048 GO:0005515
Vian3g00540 471 ProSiteProfiles IQ motif profile. 139 167 IPR000048 GO:0005515
Vian3g00540 471 Pfam Protein of unknown function (DUF4005) 340 397 IPR025064 -
Vian3g00540 471 MobiDBLite consensus disorder prediction 364 410 - -
Vian3g00540 471 MobiDBLite consensus disorder prediction 369 396 - -
Vian3g00540 471 MobiDBLite consensus disorder prediction 10 26 - -
Vian3g00540 471 MobiDBLite consensus disorder prediction 253 272 - -
Vian3g00540 471 MobiDBLite consensus disorder prediction 27 48 - -
Vian3g00540 471 ProSiteProfiles IQ motif profile. 163 190 IPR000048 GO:0005515
Vian3g00540 471 PANTHER IQ-DOMAIN 5-RELATED 1 394 - -
Vian3g00540 471 Gene3D - 137 192 - -
Vian3g00540 471 MobiDBLite consensus disorder prediction 1 57 - -
Vian3g00540 471 SMART iq_5 138 160 IPR000048 GO:0005515
Vian3g00540 471 SMART iq_5 161 182 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00540 Vian-Chr3 5363319 5365658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00540 1 466 IQD Protein Family AT4G14750 44.581 1.04e-97 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00540 - - gmx:100817667 716.072