Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00539 ATGGCCTCTCATTCTCCCAAGAGAAAAGGCCCTTATCTTAATGCAGTCTCCCTCCTCCTTCTCATCTCCTTCATCAACCCTTCACACCAAGCTGAACACCCTTTTTCACCTCTTCCCCCTCTAAATCCAAGGCTCTCCAAAGCCTACACAGCACTCCAAGCATGGAAACACAAAATCACATCAGACCCCAAAAACTTCACCTTAAACTGGTGTGGCCCCAATGTTTGCAACTACACTGGCATATACTGTGCACCTGCCCCAGATGACCCTCACATCTACACTGTTGCTGGGGTTGACCTAAACCATGCCTCCATATCTGGTTCGTTGCCAGAAGAACTTGGCCTCTTAACTGACCTAGCACTTTTCCACATAAACTCCAACCGCTTCTGTGGTTCCCTCCCCAACAGCTTCGACCACCTAAATCTCCTCCATGAACTAGACATAAGCAACAACCAATTCTCAGGACCCTTCCCCGATGTTCTTCTCTGCATCTCCTCGTTAAAATACTTGGACATCAGATTCAATAACTTCTACGGCAACATTCCCTCGCGCCTCTTCGATCTCAAACTCGATGCCCTTTTCATCAACAACAACAACTTCAAATTCTCCCTGCCTGAGACCTTCGGCAACAGTCCTGCTTCTGTTGTTGTGTTTGCAAACAATGACCTCAATGGGTGTCTCCCTTCGAGTTTGGCCAAAATGAACGCTACCCTTAACGAGATTATCATCACCAACAGTGGTTTAACGGGCTGTTTGCCTAGTGAGATAGGGGATTTGAACAAAGTGACCGTGTTTGATGTGAGCTTCAACAAGCTTGTTGGAGATTTGCCCCAGTCCTTGGGGAAAATGAAGAGGTTGGAGCAGTTGAATGTGGCGCATAACATGCTTTCTGGCACCATTCCTGAGAGTGTGTGCATGTTGCCGAGGTTGGAGAATTTCACGTACTCGTACAACTACTTCTGCAGTGAGTCACCGGTGTGTCTCAAGTTGAAGGATAAGGATGATACCAAGAACTGCATTCCTTATAGGCCATTGCAAAGGTCACCCGATGAGTGTGCAGCTTTCTACAAATATCCTGTTCATTGCAGTGCCTTTGGTTGTGTATCTCCATCGCCGCCGCCGCCACCACCTCCTCCTCCTCCACCACCACCACCGCCGCCGCCTCCACCACCGGAAAAATACCACCACTATCCCTGA 1197 0.4854 MASHSPKRKGPYLNAVSLLLLISFINPSHQAEHPFSPLPPLNPRLSKAYTALQAWKHKITSDPKNFTLNWCGPNVCNYTGIYCAPAPDDPHIYTVAGVDLNHASISGSLPEELGLLTDLALFHINSNRFCGSLPNSFDHLNLLHELDISNNQFSGPFPDVLLCISSLKYLDIRFNNFYGNIPSRLFDLKLDALFINNNNFKFSLPETFGNSPASVVVFANNDLNGCLPSSLAKMNATLNEIIITNSGLTGCLPSEIGDLNKVTVFDVSFNKLVGDLPQSLGKMKRLEQLNVAHNMLSGTIPESVCMLPRLENFTYSYNYFCSESPVCLKLKDKDDTKNCIPYRPLQRSPDECAAFYKYPVHCSAFGCVSPSPPPPPPPPPPPPPPPPPPPPEKYHHYP 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00539 398 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 228 324 - -
Vian3g00539 398 Gene3D Ribonuclease Inhibitor 214 337 IPR032675 -
Vian3g00539 398 FunFam Leucine-rich repeat extensin-like protein 1 49 210 - -
Vian3g00539 398 Gene3D Ribonuclease Inhibitor 46 213 IPR032675 -
Vian3g00539 398 SUPERFAMILY L domain-like 49 327 - -
Vian3g00539 398 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 28 391 - -
Vian3g00539 398 MobiDBLite consensus disorder prediction 369 398 - -
Vian3g00539 398 Pfam Leucine rich repeat N-terminal domain 49 83 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00539 Vian-Chr3 5347958 5349154 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00539 33 367 Leucine-rich Repeat extension Gene Families AT3G22800 66.964 8.22e-163 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00539 - - gmx:100813811 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00539 3 5347958 5349154 Vian3g00539 3 5347958 5349154 ECH