Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00538 ATGGCCGTTGGAAAGAACAAGCGCATCTCCAAAGGGAAGAAGGGTGGCAAGAAGAAGGCAGCTGATCCCTTTTCCAAGAAGGATTGGTATGACATTAAGGCTCCCTCTGTTTTCCAAGTAAAAAATGTTGGCAAAACCCTCGTCAGCCGTACTCAGGGTACCAAGATTGCCTCTGAAGGACTCAAACATAGAGTCTTTGAGGTCTCATTAGCTGATCTTCAAGGAGATGAGGATCATGCATTCAGGAAGATAAGGCTGAGAGCTGAAGATATTCAAGGGAAGAATGTCCTGACGAATTTCTGGGGAATGGATTTCACCACAGACAAACTGAGGTCTTTGGTTCGAAAATGGCAAACACTTATTGAAGCCCATGTGGATGTGAAGACAACTGATAGTTACACATTGAGGATGTTTTGTATTGGATTCACCAAGAGAAGAGCTAACCAGGTGAAGAGAACCTGTTATGCCCAATCAAGCCAGATTAGACAGATACGTAGGAAGATGAGAGAGATCATGACCAACCAGGCAACATCCTGTGATTTGAAGGAGTTGGTCCGAAAGTTTATTCCTGAGATTATTGGAAAAGAAATTGAGAAGGCAACGTCTAGCATTTATCCGCTGCAGAACGTGTTTGTCCGAAAAGTCAAGATTCTTAAAGCTCCTAAGTTTGATCTTGGGAAACTGATGGAGGTTCATGGTGATTACTCAGAAGATGTTGGCACAAAGGTAGACAGACCTGCTGATGAAACAATTGCAGAGGAACCCACCGAAATTGTTGGAGCTTAA 786 0.4338 MAVGKNKRISKGKKGGKKKAADPFSKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDHAFRKIRLRAEDIQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDSYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMREIMTNQATSCDLKELVRKFIPEIIGKEIEKATSSIYPLQNVFVRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVDRPADETIAEEPTEIVGA 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00538 261 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
Vian3g00538 261 SMART Ribosomal_S3Ae_2 15 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Vian3g00538 261 MobiDBLite consensus disorder prediction 1 15 - -
Vian3g00538 261 Pfam Ribosomal S3Ae family 16 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Vian3g00538 261 MobiDBLite consensus disorder prediction 1 22 - -
Vian3g00538 261 Hamap 40S ribosomal protein S1 [RPS3A]. 1 258 IPR027500 GO:0003735|GO:0005840|GO:0006412
Vian3g00538 261 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00538 Vian-Chr3 5341289 5343468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00538 1 261 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 87.023 1.34e-166 459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00538 3 5341289 5343468 Vian3g00538 3 5341289 5343468 ECH