Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00535 ATGGACACGCCAGATAGGAGCAAGATCAACACCCCTCTTTCTCAGTTTGAGGATTCACCTGTATTTAACTATATCAGTAATCTATCTCCTATAGAGCCTGTTAAGTCTGTTCACATTACCCAGACCTTCAATTCGCTTAGCTTCTCATCTCCTCCATCTGTTTTCACATCACCCCATGTCAATTGTCACAGAGAATCCAGATTCCTCAGGAGGCATAACCTTTTGGATGCATCCAAAGGTAAGGGTTCATCTGAAGATATAAACAATGTTTATTCATGTGAAAAGACTCCCGCAGATTCAACTCAGCCATGTCATGAATCAAGTGAGCCACAGGAAAATACCAATCCAAATATTTCCATAAGAGATGCCTCAATCGAGCCATGTGATGAAAACCCAAATATCTCAATTGAGGTCCCACAAGGCTTGAAGTATAATTTGGCTAGCCCAGGATATGAACCTGTGATCTGTGCTGATGAGGCTGACTCTCTTTTGGAACTGCCAGGCAAACCAGGATCAGATGTTTCTTATGTTCCAGATGACTCTGAAAAGGATTCAATTGAGGGTGAAATGCATCTTCCAGCTTTATGTCAAAATGAGGAAAAAATTGAAGGACCAAATTGTGGTGTGGATGATTTAATTAATGAAGCCTCTGATCTGTTAATGTTTAGTCCCCCAAATATGAAAGAAGCTTTTAAGGATATAAATAAACAATTAAATCCTTCAACAAAGCTTACCAATTTGAGGACTTTGTTACGACAATCTGCTACCAATGATGGTCATCAAATGCACATTGTTGATACAGTTGCTTCTGGTTCAGAACATGAAATTGAAAATCATCCTTGTGAATCAGGAGCAGCCACAGACACAGTTCAGAGACAAGACAAACATAACAATGTTGCTTTGGTGGCTAGCAATCCCATTGAGAAAGTGGATGATAAGCTTGTTTATGTGACACACCGTGGTATACGGAGACGCTGTTTAGATTTTGAGATGGCTAGTGTCCAAAGGAAGAATCTAGATGGTAAATCAAACACCAATTCCAGTGCAGAAAAATCTGATGAGATGGATGTTAGTAAAGGAAAGCAACTGCTCCCCATTAAACATAGTGGGGATTCACGGAAGTGTGTTTTGCCTGGAATTGGTTTGCACTTGAATGCCCTTGCTAGCTTAAATGATTGCAAAAACATAAAAATTGAGACATTGCTATCTGGAAGGCAACCTAACCTTCCCAGCTCCTCCTCATCCTTGCAACTTTCTGCAAGCCAAGATCATCAACTATCTTTGGTACCTACATCAGTGGAAAAAGATATGGAGCAATCAGATAATGAAGTTCAGCCTGGTGAAGATTGTACCCAGCCTTTGGTTCACATGCCTGGTGAAGATTGCACCCAGCCTTTGGTTCACATGCCTGGTGAAGATTGTACCCAGCCCTTGGTTCACATGCCTGGTGAAGATTTCCAGCAGAATAGCCCTAAAAAGAAAAGGCGCAGGTTGGAACAAGATGGGGAAGGGGAGTCTTGCAAGCGTTGTAATTGTAAGAAATCAAAGTGTTTGAAGCTTTATTGTGAGTGCTTTGCTGCGGGAGTCTACTGCATAGAGCCCTGTTCATGTCGTGATTGCTTTAACAAACCTATTCATGTTGATACCGTCCTTCAAACTCGCCAGCAGATTGAGTCTCGAAATCCACTTGCTTTTGCTCCTAAAGTCATACGGAGTTCTGATTCTGTACCTGAAATTGGGGATGACCCTAACAAAACTCCAGCTTCAGCCCGACACAAAAGAGGATGTAATTGCAAGAAATCAAGCTGCCTAAAGAAATACTGTGAATGTTATCAGGGTGGTGTTGGTTGCTCCATAAGCTGCAGATGTGAAGGATGCAAGAACACGTATGGTAGAAAGGATGGTTCTGTTCATTCTGGAATAGAAGCCAAGCCCGAAGAAGAAACAGAAGCATGTGAAAGGGGTGTGATGGAAAATGCTTCACATAAAACTGAAACACAAAATACTGAAGACCATCTTGATCATGCTCTTCCTACAACACCATTACGTCTTTCCAGATCATTGATCCCATTACCCTTTTCATCAAAGGGTAAGCCACCAAGATCTTTTGTTACTACCATCTCCAGTTCTGGATTGTTTGTCAGCCAAAAGCTCGGGAAATCAAGTGCTCCGCGGTCTCAACCTAAATTTGAAATGCCTGTGCAAACTGTTCCGGATGATGACTCTCCTGTCACCTGCATCAAAACTTCTTCTCCAAATGGCAAGAGGATCTCCTCTCCTAATTGTGACGTGGGATCATCTCCTACTCGCAGAGGTGGGAGGAAGTTGATCTTACAATCTATCCCTTCATTTCCTTCTCTCACCCCTCACAATCTTCGGAGTGACTGA 2388 0.4217 MDTPDRSKINTPLSQFEDSPVFNYISNLSPIEPVKSVHITQTFNSLSFSSPPSVFTSPHVNCHRESRFLRRHNLLDASKGKGSSEDINNVYSCEKTPADSTQPCHESSEPQENTNPNISIRDASIEPCDENPNISIEVPQGLKYNLASPGYEPVICADEADSLLELPGKPGSDVSYVPDDSEKDSIEGEMHLPALCQNEEKIEGPNCGVDDLINEASDLLMFSPPNMKEAFKDINKQLNPSTKLTNLRTLLRQSATNDGHQMHIVDTVASGSEHEIENHPCESGAATDTVQRQDKHNNVALVASNPIEKVDDKLVYVTHRGIRRRCLDFEMASVQRKNLDGKSNTNSSAEKSDEMDVSKGKQLLPIKHSGDSRKCVLPGIGLHLNALASLNDCKNIKIETLLSGRQPNLPSSSSSLQLSASQDHQLSLVPTSVEKDMEQSDNEVQPGEDCTQPLVHMPGEDCTQPLVHMPGEDCTQPLVHMPGEDFQQNSPKKKRRRLEQDGEGESCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCRDCFNKPIHVDTVLQTRQQIESRNPLAFAPKVIRSSDSVPEIGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNTYGRKDGSVHSGIEAKPEEETEACERGVMENASHKTETQNTEDHLDHALPTTPLRLSRSLIPLPFSSKGKPPRSFVTTISSSGLFVSQKLGKSSAPRSQPKFEMPVQTVPDDDSPVTCIKTSSPNGKRISSPNCDVGSSPTRRGGRKLILQSIPSFPSLTPHNLRSD 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00535 795 MobiDBLite consensus disorder prediction 82 121 - -
Vian3g00535 795 MobiDBLite consensus disorder prediction 347 361 - -
Vian3g00535 795 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 790 IPR044522 GO:0003700
Vian3g00535 795 MobiDBLite consensus disorder prediction 781 795 - -
Vian3g00535 795 MobiDBLite consensus disorder prediction 742 766 - -
Vian3g00535 795 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 594 629 IPR005172 -
Vian3g00535 795 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 508 543 IPR005172 -
Vian3g00535 795 MobiDBLite consensus disorder prediction 405 425 - -
Vian3g00535 795 MobiDBLite consensus disorder prediction 78 132 - -
Vian3g00535 795 SMART CXC_2 505 546 IPR033467 -
Vian3g00535 795 SMART CXC_2 591 632 IPR033467 -
Vian3g00535 795 ProSiteProfiles CRC domain profile. 506 631 IPR005172 -
Vian3g00535 795 MobiDBLite consensus disorder prediction 338 364 - -
Vian3g00535 795 MobiDBLite consensus disorder prediction 716 795 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00535 Vian-Chr3 5315601 5320916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00535 10 790 CPP Transcription Factor Family AT3G22780 40.768 3.59e-151 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vian3g00535 TCR 2.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00535 - - var:108326442 1578.15