Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00532 ATGTTCTCTTCCACATATGACTCCAACCTTTTTCCAAACTTCCCTTCTTCTTCTTACCCTATCCTTCCTTTTCTCATTGATCCTGAAAATGATTTTGCAAGCAACACCCTTTTTGATGACCCTCTTCTTGTTCCCTTCACACCCATCACCCATGATCCTCCATTTCCTGAAGAGACTGTTGCTAATTTTGCAGTTGCTGACTGCACTGCCATTCTTGAACAAGATGCAAACACTAACTATGGTTCCCACAATGGTAGCATGTCCAATTTTCTGACCCAGAAACCAGCCATAGCAAAGAAAGACAGGCACAAACTAGCCCAAAGTAAGCATAGCGGCAGTATTAGTGGGGGTGACAAGTGTTCCCGCGACGCTTCTGTGGATTCAAATAACAACAAATCATTGGCGGGTAGTGGGGTTGATGGTTCCAAAGGGAGGAAGTCAAAATCGGCACAGAAGGATGATGCTTGTGTTCAGACCAAAAAGGAGTCAAGGGAAAGGGCAAGAGCAAGAGCAAGAGAGAGGACTTGCTACAAAATGTGTAGCACTAGAAGGGTGCAGCAAGACTTTGATGAAAGGTGCCCTGTAACTGCAAACACTCAAATGCTGCACCAATTGAGGTCATCCATTCTGCCTGAACCTGAAGCTTACGCGAGATGGGTTCAGCCTTATAACCCTTTTCTCATTCATAATGAAGCACCCAGAGATGGCTTTGACGTCATTGAAGAATCTATTATGATTAAAAGGAATATGAAGCCGTCAACTATGATGGCTTCTCATCACCAAAACCAAAACCAAAACCAAAACCAAAGCCAAAACCTTGTGATCCCTAGGGATTCAAGTTTCAACAACAATGTGTGCCCCTTGCTACCCTATTCCACTCCAGACTGGGACACTAATGGGGCCTTTACTGGATACTCCAACTTTTGTTCAATAGGAACCATGAACCTATCTACATGTTTCATGAACCCGTGTGATTTATGCGTCCAGATTTGTAGAGCTTCATTCAAACCTTTGGAAATTCTTGGGAGGAGTGCATCAATCAGAGTCGACATAACTGTGCTACAACTTTTTTCTGCCCTATATTCCCATTTTACAATGTTTGTACTGATTCTTGCTGATAAGCAGCCAATGGCAAGTGAAAGTTCGTATACAGTTTCTGTTTCTGTTTCCATTTTCAATTTTATGCCTCCTCATTATATTAGGTTCTACAAGAAATGGAACTTGAATCAGCATATTACTGATGTTCAGATGGAGCATGAATCCCAACATGAGATGGCTTTATGGAAAAAGAAACAGATGAGTGATTCTGTTCGTGATCATAAGATATCCATTTGGAATTTTACATATTTTGATGACAAACACAATGGAGGGCTCTACGACCAGAAGCCCTAA 1392 0.4195 MFSSTYDSNLFPNFPSSSYPILPFLIDPENDFASNTLFDDPLLVPFTPITHDPPFPEETVANFAVADCTAILEQDANTNYGSHNGSMSNFLTQKPAIAKKDRHKLAQSKHSGSISGGDKCSRDASVDSNNNKSLAGSGVDGSKGRKSKSAQKDDACVQTKKESRERARARARERTCYKMCSTRRVQQDFDERCPVTANTQMLHQLRSSILPEPEAYARWVQPYNPFLIHNEAPRDGFDVIEESIMIKRNMKPSTMMASHHQNQNQNQNQSQNLVIPRDSSFNNNVCPLLPYSTPDWDTNGAFTGYSNFCSIGTMNLSTCFMNPCDLCVQICRASFKPLEILGRSASIRVDITVLQLFSALYSHFTMFVLILADKQPMASESSYTVSVSVSIFNFMPPHYIRFYKKWNLNQHITDVQMEHESQHEMALWKKKQMSDSVRDHKISIWNFTYFDDKHNGGLYDQKP 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00532 463 ProSiteProfiles R domain profile. 161 178 IPR017888 -
Vian3g00532 463 MobiDBLite consensus disorder prediction 122 137 - -
Vian3g00532 463 MobiDBLite consensus disorder prediction 145 171 - -
Vian3g00532 463 MobiDBLite consensus disorder prediction 98 171 - -
Vian3g00532 463 Pfam TCP family transcription factor 99 181 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00532 Vian-Chr3 5230549 5233766 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vian3g00532 TCP 2.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00532 - - aprc:113871835 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00532 3 5230549 5233766 Vian8g01174 8 30291685 30293110 PCT