Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00510 ATGAATGGTGCTGCATGTGTTGATGCAGAGTGCTGTGAGTTTGTGGAAGTTGATCCTACAGGAAGATATGGAAGATACAATGAAATTCTTGGCAAAGGAGCTTCCAAGACAGTCTATAAAGCATTTGATGAGTATGAAGGGATAGAAGTAGCATGGAATCAAGTAAAGCTTTATGACTTTTTGCAGAATCCTGAAGATCTTGAGAGGTTATACAGTGAAATCCATCTTCTCAAGACATTGAAACACAAGAACATCATGAAGTTCTATACTTCGTGGGTTGATACTGACAACAGACAAATCAATTTTGTCACCGAGATGTTTACCTCTGGGACTCTAAGACAGTACAGACTTAAGCACAGACGGGTTAACATCAGAGCTGTTAAGCATTGGTGTAGGCAGATTTTGGAAGGGCTTCTGTATCTGCACAGCCATAATCCTCCTGTGATCCACAGAGATCTCAAGTGTGATAACATTTTCATCAATGGCAACCAAGGGGAAGTCAAAATCGGTGATCTTGGCCTTGCTGCGATTCTCCGCAAATCTAATGCTGCTCGTTGTGTTGGCACCCCTGAGTTTATGGCTCCGGAAGTGTATGAAGAGGATTACAATGAGTTGGTTGACATATACTCTTTTGGAATGTGCATCTTAGAGATGGTCACTTTTGAATATCCTTATAGTGAATGCAACCATCCTGCTCAAATTTACAAGAAAGTTGTATCTGGGAAGAAGCCAGAAGCTCTTTACAAAGTAGTCAATCCAGAGGTAAGACAGTTTGTAGAGAAATGCTTAGCAACTGCGTCCCTCAGACTTTCAGCTAAGGAACTCTTGGAGGATCCTTTTCTGCAAATTGACGATTATGGATTTGACTCAAAAGTAGTGCAGTATCAAAGAGATTGCTATGAAGTAGCCCCATCAATCAGACAGCCTTTGAATGTAACGTATAGCATCAACACCTCAATGAGTGGGTACACTGATAATCTTGGTGGTTATGGGCCCTTCTCTGAATTGGATTATCATCAAAACGATTTCGAAACAAGGGAAATTGGTCTCTTTGATTGTGAAGAGGATGGCAATTTGGCTATGGTTGACACCACAATCAAAAGTGGGAGAAGAGAAGATGATGGCATCTTTTTGAGACTCAGAATTGCAGATAATGAAGGTCGAATTCGAAACATCTACTTCCCATTCGACATTGAGACGGATACTGCATTGAGCGTTGCAAATGAAATGGTAACTGAGCTTGACATAACTGATCAAGATGTAGCAGATTTGGCAAATATGATAGACAATGAAATTGCAACACTGGTTCCCGAGTGGAGAACAGGAGCCAGAATAGAGGAAAATTCAGAATGTTCAGGTGCAGGTGTCTGCCTCAATTGTGCTGCAAACGGTTACTTGTTTGATTATGTATCAAATAATCCATGTGGCAAGAATCTTCAATTTCTTCGTTGTTCTAAAAATGGATGTGCTGCAATTCATGGCCGATTTGAGGAGATAACATACCAAGTTGAAGGGTCTGCAAGTAGTGATACCGAAGGTGCACGGGATGCATCAAGCCATTCCGATGGCATTCATTATACAGATATTTGGGCCCAGAGAGATGAACCAGAGTTATGCCATGAAGAGTTAAAAGACATACACTGTGACCAAACTCACGAGGCATCAAATCCGTTGAACATCAAGGAGGAAGGAAAAGCTGTTAATGTGAATGGAGAAAGTGATCTCAATACCAAAAGGCCTCATTCAAACCCTGCAATAAATTGTTTTATGTTGGATTGTGAAAATGAAATTAGGCAAGAGCTAAGATGGCTCAAAGCAAAGTACCAGATGCAGTTAAGGGAGCTTAGAGATCAACAACTGGGGGTTAAGCCAAAATTTTCTTGCATGTCTCCTGATACGAAAAAAATAAATTGTGGGAAGGATGGAATTCAGAGTTTATCAGCTCAATCCAGATTGAAGATACAAAAGCATAAACCACAATTAAGATCTATAGTTTCCGGGAAGCATTTCCCTCTTGAAGACGAGAAATGCAATAATTATGCTGATCAAATGGTTCAAAATGTTGAGGAGATTAATCAGTCTAACAGTCCTGAGCGAATGCTCACAGCCAAGGATTTCTTTACAGGAGCTTTGTTTCCAAGCTCACTTCAGAGGGCAACCTCCCTTCCCGTTGATGCAATAGATTTCTAG 2190 0.4068 MNGAACVDAECCEFVEVDPTGRYGRYNEILGKGASKTVYKAFDEYEGIEVAWNQVKLYDFLQNPEDLERLYSEIHLLKTLKHKNIMKFYTSWVDTDNRQINFVTEMFTSGTLRQYRLKHRRVNIRAVKHWCRQILEGLLYLHSHNPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSNAARCVGTPEFMAPEVYEEDYNELVDIYSFGMCILEMVTFEYPYSECNHPAQIYKKVVSGKKPEALYKVVNPEVRQFVEKCLATASLRLSAKELLEDPFLQIDDYGFDSKVVQYQRDCYEVAPSIRQPLNVTYSINTSMSGYTDNLGGYGPFSELDYHQNDFETREIGLFDCEEDGNLAMVDTTIKSGRREDDGIFLRLRIADNEGRIRNIYFPFDIETDTALSVANEMVTELDITDQDVADLANMIDNEIATLVPEWRTGARIEENSECSGAGVCLNCAANGYLFDYVSNNPCGKNLQFLRCSKNGCAAIHGRFEEITYQVEGSASSDTEGARDASSHSDGIHYTDIWAQRDEPELCHEELKDIHCDQTHEASNPLNIKEEGKAVNVNGESDLNTKRPHSNPAINCFMLDCENEIRQELRWLKAKYQMQLRELRDQQLGVKPKFSCMSPDTKKINCGKDGIQSLSAQSRLKIQKHKPQLRSIVSGKHFPLEDEKCNNYADQMVQNVEEINQSNSPERMLTAKDFFTGALFPSSLQRATSLPVDAIDF 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00510 729 FunFam Probable serine/threonine-protein kinase WNK1 8 105 - -
Vian3g00510 729 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00510 729 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Vian3g00510 729 CDD STKc_WNK 22 281 - -
Vian3g00510 729 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 378 432 IPR024678 GO:0004674|GO:0005524
Vian3g00510 729 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 630 - -
Vian3g00510 729 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Vian3g00510 729 Coils Coil 598 618 - -
Vian3g00510 729 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Vian3g00510 729 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00510 729 FunFam probable serine/threonine-protein kinase WNK9 107 286 - -
Vian3g00510 729 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00510 729 FunFam probable serine/threonine-protein kinase WNK9 374 458 - -
Vian3g00510 729 Gene3D Phosphorylase Kinase; domain 1 9 105 - -
Vian3g00510 729 Gene3D - 375 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00510 Vian-Chr3 4947618 4950596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00510 1 512 MAP Kinase Kinase Kinase AT3G22420 57.532 0.0 606
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vian3g00510 Pkinase 2.6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00510 K08867 - gmx:100804179 1256.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00510 3 4947618 4950596 Vian3g00510 3 4947618 4950596 ECH