Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00484 ATGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGACGCAGAATGAGCGCCACCACGCCAAGACACTCATCTGTGCCCTCAACCTTCTCTCGCGCGACCTCCCTCTCCCTCCTCATATTCTCAATTCCGTCTCTTCCATCTACCGCAATCATGATGATGGAGGTAATTCTGGAGAGGACTTGATATTGGATCTTGAAGATGCACTGTCGAAGCAGCGTCCAAACTGCGTGTCTGGTTTTAAACTAGAGAAAGCAAGGGAAAGTCGGTATCGAAGTCAGATTCAGCATCGATTGAATGATCTTCAAGAATTGCCTTCAAGCAGGGGAGAGGACCTGCAGACAAAATGCTTGCTTGAACTTTATGGACTAAAGCTTGCAGAGTTGCAGATGAAGGTTCGTACTGATGTGAGTTCTGAATACTGGCTCAATGCTAAGTGTGCTTATCCGGACAGGCAATTGTTTGATTGGGGCATGATGAGGCTGCGTCGTCCATTGTATGGGGTTGGAGATCCATTTGCCATGGATGCTGATGATCAATTAAGGAAGAAACGGGAGGCTGAGAGACTATCAAGATTAGAAGAAAAGGAGAAAAATCATATAGAGACTAGAACAAGGAAATTTTTTGCAGAAATACTCAACACTGTCCGTGAGTTCCAATTACAAATTCAAGCTTCTTTGAAGAGGAGAAAACAGAGGAATGATGGTGTCCAGGCATGGCATGGAAGACAAAGACAACGAGCAACTCGGGCAGAGAAATTGAGGTTCCAAGCCTTGAAGGCTGATGATCAAGAAGCGTACATGAGAATGGTGAAAGAGAGTAAGAATGAGAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTACTAGTAAATTTAGGAGCAGCTGTTCAACGTCAAAAAGACAAAAAGTATTCAGATGGTATTGAGCCATTGGAAGATTCTGAAGCAGATTTACCAGAGTCAGAAAAGAATGGAATTTCTAAGGAGTCACCTATTGATGAAGATGATATGATCGATTCTGATCATAATGGTGATTCCAGTGATTTACTTGAGGGTCAGCGGCAATACAATTCTGCCATACATTCAATTCAAGAAAAGGTGACTGAGCAACCATCTATTCTTCAAGGTGGAGAGTTAAGACCATACCAGATAGAGGGGCTCCAGTGGATGCTTTCTTTGTTCAATAACAATTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGGAAGACGATACAAACAATTTCGCTTATAGCATATCTTATGGAAAACAAGGGTGTTACCGGTCCCCACTTGATTGTTGCTCCAAAGGCAGTTCTGCCAAATTGGGTCAATGAATTCACAACATGGGTTCCTAGCATCACAGCTATTCTTTATGACGGACGGCTGGATGAGAGGAAGGCAATGAAGGAAGAGTTATCAGGGGAGGGGAAATTCAATGTTTTATTGACACACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATTCAATGGAAGTACTTGATTGTGGATGAAGGGCACCGGTTGAAAAACCATGAGTCTGCTCTGGCAAGAACCTTGGACAATGGTTATCACATCCAACGAAGACTTCTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAGTTGTGGTCTTTGCTTAATTTTCTCCTTCCAAACATTTTTAACTCGGTTCAAAATTTCGAGGACTGGTTTAATGCCCCCTTTGCAGACCGAGTTGATGTCTCCCTCACAGATGAGGAACAACTATTGATCATCCGGCGCCTGCATCAAGTAATAAGGCCCTTCATATTAAGAAGGAAAAAAGATGAGGTGGAAAAATTTCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTTACAGATGTAGGCAGAGTTGGGTTGGACAACGGTTCTGGAAAGTCAAAAAGTCTACAAAATTTAACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTATTCGTGGGAGAATATGATATGTATAAACGTAAGGAGGAGATTGTTAGAGCATCAGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACAGAGTCCTCCTTTTCTCACAAATGACTCGACTTATGGACATTCTTGAAATCTATTTACGACTTCATGATTTTAAGTATCTTAGACTTGATGGTTCAACAAAAACTGAGGAAAGAGGCAATCTTCTAAGGAAATTTAATGCTCCTGACTCCCCATACTTTATGTTTCTCTTGAGCACTCGTGCTGGAGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATCTTTGATAGCGATTGGAATCCACAAATGGATCAACAAGCCGAGGACCGAGCGCATCGCATTGGACAGAAAAAGGAAGTTAGGGTTTTTGTTTTGGTTAGTGTAGGATCAATTGAAGAGGTGATTCTAGAGCGTGCAAAACAAAAAATGGGCATTGATGCCAAAGTTATCCAAGCAGGACTTTTCAACACAACTTCGACAGCCCAGGACAGAAGAGAAATGTTAGAAGAGATTATGCGCAGAGGTACAAGCTCACTTGGGACAGATGTGCCGAGTGAGAGAGAAATTAACCGTCTTGCTGCCCGATCTGACGAGGAGTTTTGGCTGTTTGAGAAAATGGATGAAGAGAGAAGACAAAAGGAAAATTACAGATCCCGTCTCATGGAAGAACATGAATTGCCAGATTGGGTATATTCTCCAATTAACAAGGATGATAAGTCCAAAGATTTCAACAGTGCTGTCACTGGAAAACGGAAAAGAAAAGAAGTGGTATACGCAGATACGTTGAGTGATCTGCAATGGATGAAGGCTGTGGAGAACGGAGAAGACATATCAAAGTTTTCAGCTAAAGGAAAAAGAAGAGACCACCACTCATCTGACAGCATTGCTCAAGCCAGCGATAACACAGTAGCAGAAGAAAGTTTAGAGTTGAGGACTGAAAGTGTTCCTATGACAAACGATCGCACGAGTGAAGATAGTTTCCATGTGACCCCTTCTTCAAAGAGATTCAAATCTGAAGGAACGAATTTCCTGAAACATACATACGAGGATGTTGGAAGTGGTTTGAACCACCATGTGTTATCATGGAATACTCACAAAAAGAAGAGGTCAAGTTTTCTGGGCCAGGGTTCATTATCTGATGCCAGAGGGCATTCTTCCAATGGAAGAGCAAACTGGAACTGA 3246 0.4196 MEKEKEKEKEKETQNERHHAKTLICALNLLSRDLPLPPHILNSVSSIYRNHDDGGNSGEDLILDLEDALSKQRPNCVSGFKLEKARESRYRSQIQHRLNDLQELPSSRGEDLQTKCLLELYGLKLAELQMKVRTDVSSEYWLNAKCAYPDRQLFDWGMMRLRRPLYGVGDPFAMDADDQLRKKREAERLSRLEEKEKNHIETRTRKFFAEILNTVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDKKYSDGIEPLEDSEADLPESEKNGISKESPIDEDDMIDSDHNGDSSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMENKGVTGPHLIVAPKAVLPNWVNEFTTWVPSITAILYDGRLDERKAMKEELSGEGKFNVLLTHYDLIMRDKAFLKKIQWKYLIVDEGHRLKNHESALARTLDNGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGEYDMYKRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKYLRLDGSTKTEERGNLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYSPINKDDKSKDFNSAVTGKRKRKEVVYADTLSDLQWMKAVENGEDISKFSAKGKRRDHHSSDSIAQASDNTVAEESLELRTESVPMTNDRTSEDSFHVTPSSKRFKSEGTNFLKHTYEDVGSGLNHHVLSWNTHKKKRSSFLGQGSLSDARGHSSNGRANWN 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00484 1081 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 391 557 IPR014001 -
Vian3g00484 1081 MobiDBLite consensus disorder prediction 1061 1081 - -
Vian3g00484 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 604 IPR027417 -
Vian3g00484 1081 Coils Coil 894 914 - -
Vian3g00484 1081 FunFam Probable ATP-dependent DNA helicase CHR12 610 909 - -
Vian3g00484 1081 Coils Coil 1 21 - -
Vian3g00484 1081 Coils Coil 182 202 - -
Vian3g00484 1081 Pfam SNF2-related domain 382 670 IPR000330 GO:0005524|GO:0140658
Vian3g00484 1081 Gene3D - 610 910 IPR027417 -
Vian3g00484 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 606 857 IPR027417 -
Vian3g00484 1081 MobiDBLite consensus disorder prediction 301 350 - -
Vian3g00484 1081 SMART SnAC_2 896 956 IPR029295 GO:0042393
Vian3g00484 1081 SMART ultradead3 375 568 IPR014001 -
Vian3g00484 1081 Pfam Helicase conserved C-terminal domain 690 803 IPR001650 -
Vian3g00484 1081 FunFam Chromatin structure-remodeling complex protein SYD 370 613 - -
Vian3g00484 1081 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 693 860 IPR001650 -
Vian3g00484 1081 MobiDBLite consensus disorder prediction 317 348 - -
Vian3g00484 1081 PANTHER SNF2/RAD54 HELICASE FAMILY 122 979 - -
Vian3g00484 1081 MobiDBLite consensus disorder prediction 969 1001 - -
Vian3g00484 1081 Pfam Snf2-ATP coupling, chromatin remodelling complex 897 956 IPR029295 GO:0042393
Vian3g00484 1081 Gene3D - 348 603 IPR038718 -
Vian3g00484 1081 CDD SF2_C_SNF 679 814 - -
Vian3g00484 1081 SMART helicmild6 719 803 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00484 Vian-Chr3 4632933 4643237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00484 361 830 RAD5 or RAD16-like Gene Family AT1G02670 27.224 1.07e-35 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vian3g00484 SNF2_N 2.2e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00484 - - gmx:100786280 2024.59