Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00481 ATGCAAGACTTTTTGGGCTCTCTTCGCCGCTCCCTGGTTTTCCGACCCGGGGGTGACGATGCTCCTTTTGCCGGAATCGCCGACAAGCTTGGCTCCGCCATTCGCAAATCGCGAATCGCGTTAAAACCTCCTCCTCCTCCCATCCGGTGGCGCAAGGGCGAATTGATTGGTTCCGGTGCCTTCGGTCACGTCTACATGGGAATGAACCTCGATTCCGGGGAGCTTATTGCCATCAAACAGGTTTTAATCGCTCCTGGTAGCGCTTACAAGGAGAACACACAGGTTTGCAATGTTGAGCTTCGTAGAAGTGTTTTCAGTGGTCATGGTGTGGAATCAGTGTGGAATGAAATGCTCTTGTTTTGTGCTAATATTCGGGAGCTCGAAGAAGAAGTTAAGCTTCTCAAGAATCTTAAGCATCCAAATATTGTTGTGAGTGTGGTCTTATTACTCGAATCAGAGTACTTTGATTCCTTGGTGTTCAATAATAGATACTTGGGAACTGCGAGAGAGGAGAACTCCTTAAATATTCTGCTGGAGTTCGTACCCGGTGGTTCTATCTCATCACTTTTGGGGAAATTTGGATCCTTCCCCGAATCCGTTATAAGAATGTATACGAAACAGCTTTTACTGGGCCTTGAATACCTTCACAATAATGGGATTATTCACAGAGATATTAAGGGAGCCAACATTCTAGTTGATAACAAAGGGTGCATTAAACTTGCAGACTTTGGTGCATCCAAGAAAGTTGTTGAACTGGCTACTATTAACGGTGCAAAATCAATGAAGGGCACGCCACATTGGATGTCCCCTGAAGTTATTCTACAAACAGGACATACAATCTCCACTGATATATGGAGTGTTGCATGCACCGTGATAGAGATGGCCACAGGGAAGCCTCCATGGAGTCAACAGTATCCCCAAGAGGTTTCAGCTCTTTTCTATATTGGGACAACTAAATCTCATCCACCCATACCTGATCATCTGTCAGCTGAGGCCAAAGACTTTTTGCTGAAATGTTTCCACAAGGAACCAGATTTAAGGCCTTCTGCATCAGAGTTGTTACAGCATCCGTTCATCACCTCTGAATATCATGGATCGCATTCAATCTTACGCAGTTCAATCAGGGATTCTTGCAATAAGATGGCAACATATGGAATGAACTCTAGAACCTTCTTGGATTCTGTCCAGGGATCAACTTGCACTGGCTTAAAGGATGTTTGTCAGATAGACAGCATAAAATTCTCAACTGTGTATCATAAAGCAGGTTCCTACCAGAGAGCAGACAACAATGATGATGACATGTGTCTGATGGATGAAGATGATTTTTTGATTGGTTCACCAGTAAAATCTGCATCTCTATTAGCTTCTGATGATACGAAGAGTTGCAATCCTTCGAGCAAACCTGCGGATGATCATCCTTGCGATTTTAATGAAAGCCTATATTTAGAGAAAAACAGACCGCACCTATCATTTTCAAGTGAGCCTCTAGGAACTGAAGATGATGAAGAAGTTACTGAATGTAAAATTAGAGAGTTCCTTGATGATAAGGCACTTGAGCTGAAGAAGCTTCAAACACCTCTTTATGAAGAATTCTTAAGCATATCAAATGCAGCCATTGCTCCTACTCCCTTTGCAAAGAGTAAAGTTATGTCGGGTGTCCCAAATGTAACATCAAAACTCAGATCGCCTAGTCAGGCTTGGAGACGATTCTCAATGGTTGGCAGTGCTACTGTAGCAAGCCCTGGAAGTCATACCAAATACCGATCGAAGCATAATGGTGGTTACTGTCAACCTTTGCAGGAAATTCAGCCACCTAAGCTTAATGAATCAAAGGAGACTCTTCATGACGCTGAGCTGGAATCATCTAGTGTAAGCTCAAACTTCTCTGAGAGGCAAAGGAAATGGAAAGAAGAATTGGTTGAAGAGCTGGAGTGGAAGCGAGGCAACTGCATGATGAGCTACAAGCCCTACTCCTCTCCTAACCATCCAATTATACTTTTGTGGGTAAGATTGGGTAATTGGGGGTTGGGTTGA 2034 0.4361 MQDFLGSLRRSLVFRPGGDDAPFAGIADKLGSAIRKSRIALKPPPPPIRWRKGELIGSGAFGHVYMGMNLDSGELIAIKQVLIAPGSAYKENTQVCNVELRRSVFSGHGVESVWNEMLLFCANIRELEEEVKLLKNLKHPNIVVSVVLLLESEYFDSLVFNNRYLGTAREENSLNILLEFVPGGSISSLLGKFGSFPESVIRMYTKQLLLGLEYLHNNGIIHRDIKGANILVDNKGCIKLADFGASKKVVELATINGAKSMKGTPHWMSPEVILQTGHTISTDIWSVACTVIEMATGKPPWSQQYPQEVSALFYIGTTKSHPPIPDHLSAEAKDFLLKCFHKEPDLRPSASELLQHPFITSEYHGSHSILRSSIRDSCNKMATYGMNSRTFLDSVQGSTCTGLKDVCQIDSIKFSTVYHKAGSYQRADNNDDDMCLMDEDDFLIGSPVKSASLLASDDTKSCNPSSKPADDHPCDFNESLYLEKNRPHLSFSSEPLGTEDDEEVTECKIREFLDDKALELKKLQTPLYEEFLSISNAAIAPTPFAKSKVMSGVPNVTSKLRSPSQAWRRFSMVGSATVASPGSHTKYRSKHNGGYCQPLQEIQPPKLNESKETLHDAELESSSVSSNFSERQRKWKEELVEELEWKRGNCMMSYKPYSSPNHPIILLWVRLGNWGLG 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00481 677 ProSitePatterns Protein kinases ATP-binding region signature. 56 79 IPR017441 GO:0005524
Vian3g00481 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Vian3g00481 677 Pfam Protein kinase domain 126 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00481 677 Gene3D Phosphorylase Kinase; domain 1 37 103 - -
Vian3g00481 677 SUPERFAMILY Protein kinase-like (PK-like) 49 360 IPR011009 -
Vian3g00481 677 SMART serkin_6 50 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00481 677 CDD STKc_MAPKKK 49 359 - -
Vian3g00481 677 ProSiteProfiles Protein kinase domain profile. 50 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00481 677 Gene3D Transferase(Phosphotransferase) domain 1 114 390 - -
Vian3g00481 677 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 45 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00481 Vian-Chr3 4570656 4578141 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00481 1 635 MAP Kinase Kinase Kinase AT3G06030 51.399 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vian3g00481 Pkinase 7e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00481 - K20606 gmx:100795863 1001.12