Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00479 ATGTTCTCCCAAAATCTGATTCTCCCTCCCGAAAACCCTAGACAAGCGGCCTCGTTCGCCTCAAAACCCATGAGCAATGAGATCGCAATCGCTGCGCAGAAACCTCCTCCGTCGATTCTCGTTGGCCGCTTCAAGGCACTCCTCAAGCAGCGTGATGACGAACTCAGACTCGTCGCAGGCGTCCCCGTTCCGCCCCCGACAACAGATGAAATCGTCCAGATTTACGACCTCCTTTTGTCGGAACTCACCTGTAATTTGAAGCCTATCATCACCGATCTCACAATCATCGCCGAACAGCAGAGGGAGCACGCCAAAGGCATCGCTGATGCAATTTGCGCTCGGATTCTCGAGGTGGCAGCAGATCAAAAGCTCCCCTCACTCTATTTGTTGGACAGTATTGTGAAGAATTTTGGGCAGGAATACATTAAATACTTCTCTTTACGTCTGCCAGAAGTCTTTTGTGAGGCATACAGGCAGGTTCAGCCTAGTTTGCATCCTGCTATGCGGCATCTTTTTGGGACATGGTCAAAAGTTTTTCCCCCTTCTGTCCTACGCAAGATTGAAGCTGAATTGCAATTTTCCGCAGCAGTTAATACCCAATCATCCACCCTGAATGCTGTAAGGGCTTCTGAATCTCCGCGGCCTAGTCATGGCATACATGTTAATCCAAAATACCTGCGCCACTTGGATCACTCAACCGCCGATAGTGTTGGTGCTGAAAAGTTGGATTCATCAGGAAATGCCAATAATACAAACTTTGGCATTCTAGGTAGTAAGACACACCAAATTTTATCAGGCAGTGGCAGGCTGGGAATATCCTCTTCCCCTTCAAGAAGTGGACTTGATAGGCCTTTGTCTGCATCCATGGATGAGTATGCAGCTGACAGTTCTGCTAACAGATTAATTGAGAGAGACTCTTCTCATCCTGCTGTTGATTATGGAGTAGGCAAGGCAATAGGTAGAGATATGGAGTTGAGTGAATGGCAACGAAAGCAGTATGCTGGTGATGGTCGTAATAGGTTTTCGACTTCTATCACATACAGCCTTAGTAATGGACATCAGCGTCAAAGTCCCAGAGCTTTAATCGATGCATATGGCAGTGACAAAAGTCAAGAAAATTCAAGTACTAAGCGTTTGCTAGTAGAACGGCTTGATAGAAATGGTATAGACAACAAGGTATTGCCTACATCATGGCAGAATACCGAAGAGGAGGAGTTTGATTGGGAAGATATGAGTCCAACCTTAACTGATCATAGTAGAAATAACAGTATATTGCCTTCAACTATTGGATTCACCAGGGAAAGGCCTGTTGTTGCAGCTAATGCCGCTTTGTCAGAGCATGATTCCAGGAAGGGGGTTTGGTCTAGTGGATCTCAGCTTCCTCCAGTGGATGATTCTTCTGCTGTAGCAGAAGATGCATTTGCTTCTTTGGGTGTAACATATCTTTTACCAATGGAAAGGAGTCTTTCGATTCCTCCATTTGATAGCATTCACAACGCATATACAAACCCTTATTGGGTTTCACTTGCAATTTCAAGCATGGTTTCTGGCTATGTATCTAATGTGAAACCTAGACCATTAGTTTTGTTTGCATCTCTTAAAGTAAGTCCTTATGTATATCGTAATGTTACTCAACCTCCTACCTTAAATGCAATAGTGGGACTTGCCAATACTTGCTCTGATACAATTGAAAATATATCTATTCTCTCTTTGCAGTTTCGACGACCACCGCTGGGACAGGTACCTGGATTCCAAAATCATGTCAATCATAGTCTGGGTTCTTCTCATCATCTGTCCAACTCGTCACAACATATCTTTGGTAATAGGGGCCGGGCAAGAACTCTTACATTTCCTCCTATTGATAACATTCACAATGCCGATACAAATCCATATCGGGTTCGACCTGCAGTGTCAAGGATGGTTTCTGGCCGTGTCTCTAATGTGGAACCTAGACCATCAGTTTTGCCTGCAACTCCGCCTTCTGTAAATTTGAATGTCACTCGACCACCTGCATTAAATCCAATAACTCCATTACAAAAACATGTTAGGAGTCAGTTTGAAGCTTTACATACTAGTAACCCTGTTGTGAATCATGTAAATAAATCTTCGTTTATGCCAGAGCAGTCATTTGACAGTGTTGAGAAGAAGGATGCAAGTATTTTGAAGATACATCAGTTGCCTAATCAGCTTCCTGGACTAATTTCGTCCAACCAGCAAATTCACAGGCAAGCACCACAACTGCAGTTTTTCCCACCATCTCAGGATTCGTCAAACTCACAATTTAGTCATGGGAGTTCTTTGCAGGGACATGGTGCTTCTATAAGTACTGCCATGTCGAATCCGTTACCTATTATGCAATTCCATTTGCCACTCCAAAATGTTGCAAATAACCCTTTACATTTACAGGGTGGAGCCCGTCCACCTTTACCTCCAGGTCGCCCTCTTGCTCCACCACAAATGATACCTCATCCAAATGCCAGTCCATTTATGTCAAGCCAACAGCCAACTGTTGGATATACTAATTTAATTAGTTCTCTAATGTCTCAAGGTGTGATCTCATTGGCCAACCAGCTGCCTACACAGGATTCTGTTGGAACTGAGTTCAATCCAGATATTCTGAAGCTTCGTTATGAGTCTGCTGTCAATGCCTTGTATGGTGATCTCCCAAGACAATGCACAACTTGTGGACTCCGATTCAGATGCCAAGAGGAACACAGTAGTCATATGGATTGGCATGTGACAAAGAATCGGATGTCTAAAAGCCGGAAGCAGAAACCCTCTCGGAAGTGGTTTGTGAGTGACAGGATGTGGCTTAGTGGTGCAGAGGCATTAGGAACTGAGTCAGTTCCAGGTTTTTTGCCTACGGAAACCATAGAAGAAAAGATAGATGATGAAGAGTTGGCTGTTCCAGCAGAAGAGGATCAGAATACTTGTGCATTATGTGGAGAGCCTTTCGATGAGTTTTACAGTGATGAAATGGAGGAATGGATGTATAGGGGAGCTGTATACCTCCATGCTCCCACGGGGACAACATCAGGCATGGACAGGTCACAGTTAGGCCCCATAATTCATGCTAAGTGCAGATCAGAATCTAATATGGCACCATCTGAAGATCTTGGGCCGGATGAAAAGGGTGGTGATGAAGAGGGTACCCAAAGGAAGCGAAGGCGTAGTTGA 3177 0.4448 MFSQNLILPPENPRQAASFASKPMSNEIAIAAQKPPPSILVGRFKALLKQRDDELRLVAGVPVPPPTTDEIVQIYDLLLSELTCNLKPIITDLTIIAEQQREHAKGIADAICARILEVAADQKLPSLYLLDSIVKNFGQEYIKYFSLRLPEVFCEAYRQVQPSLHPAMRHLFGTWSKVFPPSVLRKIEAELQFSAAVNTQSSTLNAVRASESPRPSHGIHVNPKYLRHLDHSTADSVGAEKLDSSGNANNTNFGILGSKTHQILSGSGRLGISSSPSRSGLDRPLSASMDEYAADSSANRLIERDSSHPAVDYGVGKAIGRDMELSEWQRKQYAGDGRNRFSTSITYSLSNGHQRQSPRALIDAYGSDKSQENSSTKRLLVERLDRNGIDNKVLPTSWQNTEEEEFDWEDMSPTLTDHSRNNSILPSTIGFTRERPVVAANAALSEHDSRKGVWSSGSQLPPVDDSSAVAEDAFASLGVTYLLPMERSLSIPPFDSIHNAYTNPYWVSLAISSMVSGYVSNVKPRPLVLFASLKVSPYVYRNVTQPPTLNAIVGLANTCSDTIENISILSLQFRRPPLGQVPGFQNHVNHSLGSSHHLSNSSQHIFGNRGRARTLTFPPIDNIHNADTNPYRVRPAVSRMVSGRVSNVEPRPSVLPATPPSVNLNVTRPPALNPITPLQKHVRSQFEALHTSNPVVNHVNKSSFMPEQSFDSVEKKDASILKIHQLPNQLPGLISSNQQIHRQAPQLQFFPPSQDSSNSQFSHGSSLQGHGASISTAMSNPLPIMQFHLPLQNVANNPLHLQGGARPPLPPGRPLAPPQMIPHPNASPFMSSQQPTVGYTNLISSLMSQGVISLANQLPTQDSVGTEFNPDILKLRYESAVNALYGDLPRQCTTCGLRFRCQEEHSSHMDWHVTKNRMSKSRKQKPSRKWFVSDRMWLSGAEALGTESVPGFLPTETIEEKIDDEELAVPAEEDQNTCALCGEPFDEFYSDEMEEWMYRGAVYLHAPTGTTSGMDRSQLGPIIHAKCRSESNMAPSEDLGPDEKGGDEEGTQRKRRRS 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00479 1058 SUPERFAMILY ENTH/VHS domain 67 191 IPR008942 -
Vian3g00479 1058 MobiDBLite consensus disorder prediction 749 774 - -
Vian3g00479 1058 Pfam CID domain 86 186 IPR006569 -
Vian3g00479 1058 FunFam polyadenylation and cleavage factor homolog 4 64 192 - -
Vian3g00479 1058 CDD CID_Pcf11 75 192 IPR047415 -
Vian3g00479 1058 SMART 558neu5 70 192 IPR006569 -
Vian3g00479 1058 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 56 472 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Vian3g00479 1058 MobiDBLite consensus disorder prediction 1027 1058 - -
Vian3g00479 1058 ProSitePatterns Zinc finger C2H2 type domain signature. 892 912 IPR013087 -
Vian3g00479 1058 Gene3D - 65 193 IPR008942 -
Vian3g00479 1058 ProSiteProfiles CID domain profile. 67 195 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00479 Vian-Chr3 4549415 4556502 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00479 40 499 C2H2 Transcription Factor Family AT4G04885 46.414 1.60e-104 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00479 K14400 - gmx:100794796 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00479 3 4549415 4556502 Vian3g00479 3 4549415 4556502 ECH