Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00478 ATGGCGGCCAAGTTGAAAAATTTGAAATTGCAGTTGACAGCTGCAAATAGTGGCGAGACAGCCGCAAACAACGACGAACGGCACCGGACAGGTGCAACCAGCAGTGACCGTGCTGGAAGTGCTAGCAATACAAACTTTGGCTCTGTGGCTAGTGAGGCACACAAACTTTTATCAGACAGTAGCAGCCCTAGTAATGGATATCAGCCTGAAATATTAAAAGCTTTAATTGATGCATATGGCAAAGAAGAAAGCCGAGAATGTCCAAGCAGTAAACCACTATTAGTTGAACAGATGCATAGGAACTGTATAGACAATAAAGTGTGGTCAAAATCATGGCAGAATACAGAAGAGGAGGAGTTTGACTGGAAAGATTTGAAGTCAACCATAGTAGACAATAGCAGGAATAAAGGTTCATTACCTTCAACCGGCTTTTTCTCCAGGGAAATACCTGTTGTTGCAGCTAGTGCAACTTTGTCAGAGCAAAATGCCAGCAAGGGTTGGTCTACTGGATCTCAGCTTCCTCTACTTCATGATTCCTCTGCTATGGCGATGAAGCATAGCCTGGTCTCCTCTCAATCTCATGATGCTATGAAGATTCCTCATCATCGCTATAACTCGTCTCAACATATCTTTAGTAGAATGGGTGAATCAAGGACTCTTACGAACACTCCAATTAATCACATTCCCAAAAGTTATGAAAACCCAAATGGGGTTCGACATGCAGTGCCGATAATGGCTTCTGGCATTCCCTCTAATGTGAAACCTCCACCATCAGTTGTGCTTGCAGCTTCTGAAACAAGGCCTTCTGTAAATCAGAATGTCACTCGATCTCCTACTATGAAGCGTGCGATAAATAACTCTATGATTGTACCAGCACAGTCAGGTGGCGCCTTTGAGAAGAAGGATGCATATACTACACATATGCATCAGTTTCCTGAGAAACTTCCTGGCCAAGTTTCTTCCAACCAGAAAAATCACTGGAAAGCACCACAGCCCAAGTTTTTTCCATCTCAGGATCCATCAACCAAACAGTTTGGTCATGGGATGGATTTTTTGAAGAGATCTGGTGCATCCACAAGTACAACCATGTCGAATACGTTACCTACTGTGCTATTCCCTTCACCACTTCCAAGTATTGCAAACTACCCTTTTCATCCAGGTCACCCTCCTGCTTCATCTCAAATGATGATACCTCATCCGAATGTTGGTCCGTTTATGTCAAGCAAACAGCCACCAGATACTGATCAAATTTCTCATGCTGACATCTCATCGGATAAACTACTGCCACCACAGAATTCCATCGGAACCGAGTTTAAAGCAGACATTCTGAAGGTTCGGCATGAGTCTGTAATTAATGGCTTGTATGGTGATCTCCCTAGACAATGCAGAAGTTGTGGGCTGAGATTCAGAAGCCAAGAGGAACACAGAAGTCACATGGATTGGCATGTGACCAAGAATCGGAAGCAGAGAATCTGTCGTGAATGGTTTGTGAGGGAGAGGATGTGGCTTAGTGGTGCAGAGGCAGTGGGAACGAAGTCAGTAGCAGCTTTTTTTCCGACAGAAAGAAAAGAAGAAACGAAAGATGAACAAGAGTTGGCGGTGGTAGCAGAAGAGGAGCAGAAAAGATGTGCATTGTGTGAAGAGGCTTTTGAGGAGTTTTACAGTGATGAAATGGAGGAGTGGATGTATAGAGGAGCTGCGTACCTGTATCAACCCACAGGAAAATTAGCAACAAGCATAGAGAGGTCACAGTTAGGTCCCATAATTCATGCTAAATGCAGATCAGATCCTAAAATGCCTCTCTCCCAACATCTTCCAGAGGATGATTACCAAGAGGGTACCCCAAGTAAACGAATGCGGATTTGA 1866 0.44 MAAKLKNLKLQLTAANSGETAANNDERHRTGATSSDRAGSASNTNFGSVASEAHKLLSDSSSPSNGYQPEILKALIDAYGKEESRECPSSKPLLVEQMHRNCIDNKVWSKSWQNTEEEEFDWKDLKSTIVDNSRNKGSLPSTGFFSREIPVVAASATLSEQNASKGWSTGSQLPLLHDSSAMAMKHSLVSSQSHDAMKIPHHRYNSSQHIFSRMGESRTLTNTPINHIPKSYENPNGVRHAVPIMASGIPSNVKPPPSVVLAASETRPSVNQNVTRSPTMKRAINNSMIVPAQSGGAFEKKDAYTTHMHQFPEKLPGQVSSNQKNHWKAPQPKFFPSQDPSTKQFGHGMDFLKRSGASTSTTMSNTLPTVLFPSPLPSIANYPFHPGHPPASSQMMIPHPNVGPFMSSKQPPDTDQISHADISSDKLLPPQNSIGTEFKADILKVRHESVINGLYGDLPRQCRSCGLRFRSQEEHRSHMDWHVTKNRKQRICREWFVRERMWLSGAEAVGTKSVAAFFPTERKEETKDEQELAVVAEEEQKRCALCEEAFEEFYSDEMEEWMYRGAAYLYQPTGKLATSIERSQLGPIIHAKCRSDPKMPLSQHLPEDDYQEGTPSKRMRI 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00478 621 ProSitePatterns Zinc finger C2H2 type domain signature. 462 482 IPR013087 -
Vian3g00478 621 MobiDBLite consensus disorder prediction 1 47 - -
Vian3g00478 621 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 42 599 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Vian3g00478 621 MobiDBLite consensus disorder prediction 601 621 - -
Vian3g00478 621 MobiDBLite consensus disorder prediction 596 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00478 Vian-Chr3 4537644 4542256 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00478 363 620 C2H2 Transcription Factor Family AT4G04885 44.561 1.26e-66 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00478 K14400 - gmx:100794796 572.778