Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00477 ATGGAGATTGGTAGCGTAGCAATGAAGGAATTCACAAACCTCGCCGAGGCTGGAAACCCTTTGTGGCTCCCTGGAAGCTGTGGCTGTGAGATTCTGAACCAGGATGAATATCTGAGATCTTTCCCTAAGGGAATAGGTCCAACACCCTTAGACGTTAAAATTGAAGCTTCAAGGCAGTCCGCAGTGGTAATCATGGATTACAATAAACTCGTTGAGATCTTTATGGATGTGAATCAATGGGCAAACATGTTTTGCGGTATCATTTCAAGGGCGGCGATACATCAAGTTCTGGAAGTTGGCCAAACAGAAATCTTGGACGGAGCCTGTCAAGTGATGTCAGCTGAGTTCCAAGTCCCTTCACCGCTTGTTCCTGTTCGTGATGACTATTTTGTGAGGTTCTGTAAGAGAAAAAATTTAGAATCATGGACTATTGTTGATTTTTCCATGGATCAGCTGCGACCCGGTTCATTCACAAAAAGCCGAAGACGACCCTCTGGTTGCCTAATCACAGAATTGCCAAATGGTTACTCAAAGATTGTTTGGATTGAACATATAGAACTGGAAGATAATGAAGTGCATGATCTTTACAAAAGCTATGTTAATTCTGGCCTCGCCTTTGGAGCTAAACGCTGGGTGGCATCCTTGGATAGACAATGCGAACGTCTTGCAAGTTCAATGGCCACGAACATACCCCATAAGAGCATTGGTGTGCTAACAAATTCTGGAGGACGAAGAAGTATGATGAGGCTGGCCGAAAGAATGATGTTGAGCTTTTGTACTGCTGTTGGTGCATCTACTGCAAATGCTTGGACACTAATAACAGATGCCAGTGAAGATGTAAGGGTCATGACCAGAAAAAGTGTGGATGATCCAGGAAGACCTTCCGGCATTGTGCTCAGTGCTTCAACTTCTTTGTGGCTCCCCATTCCTTCAAGGACAGTTTTTGATTTTCTGCGATCTGAAAACTCAAGAAATCAGTGGGACATTCTCTCTAACGGAGGACAAGTGGAAGAATTGGCACACATTGCCAATGGTCATGATACTGGCAACTGTGTCTCCTTGCTTCGAGTCAACACTCCGAATTTCGGCCAAAGCAATATGACTATGCTTCAAGAGACGTGCACTGATGCCACAGGCTCGTTTGTTGTGTATGCTCCTGTTGATTTAATTTCCATGAATGCTGTGTTGAGAGGTGGAAATCCTGATTGTGTTGCCCTGCTGCCCTCGGGCTTTGCTGTTCTTCCTGATGGGCCTGAACCGATGAACAACGAAGGACCCATTCGTGAGGTTGGATCTGGAGGTTGCCTTCTAACAGTGGCATTTCAGATATTGGTTGATTCTGTTCCAACTTCAAAACTCTCTGCTACTTCAGTGACCACTGTTAGCAGTTTAATCAAGTGCATAGTTGAGCGGATCCAAGCCGTAGTATGCAGTGGCGGCACTTAG 1446 0.4516 MEIGSVAMKEFTNLAEAGNPLWLPGSCGCEILNQDEYLRSFPKGIGPTPLDVKIEASRQSAVVIMDYNKLVEIFMDVNQWANMFCGIISRAAIHQVLEVGQTEILDGACQVMSAEFQVPSPLVPVRDDYFVRFCKRKNLESWTIVDFSMDQLRPGSFTKSRRRPSGCLITELPNGYSKIVWIEHIELEDNEVHDLYKSYVNSGLAFGAKRWVASLDRQCERLASSMATNIPHKSIGVLTNSGGRRSMMRLAERMMLSFCTAVGASTANAWTLITDASEDVRVMTRKSVDDPGRPSGIVLSASTSLWLPIPSRTVFDFLRSENSRNQWDILSNGGQVEELAHIANGHDTGNCVSLLRVNTPNFGQSNMTMLQETCTDATGSFVVYAPVDLISMNAVLRGGNPDCVALLPSGFAVLPDGPEPMNNEGPIREVGSGGCLLTVAFQILVDSVPTSKLSATSVTTVSSLIKCIVERIQAVVCSGGT 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00477 481 Pfam START domain 7 221 IPR002913 GO:0008289
Vian3g00477 481 SUPERFAMILY Bet v1-like 243 473 - -
Vian3g00477 481 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 1 476 IPR042160 -
Vian3g00477 481 SMART START_1 2 221 IPR002913 GO:0008289
Vian3g00477 481 CDD START_ArGLABRA2_like 1 220 - -
Vian3g00477 481 ProSiteProfiles START domain profile. 1 224 IPR002913 GO:0008289
Vian3g00477 481 SUPERFAMILY Bet v1-like 3 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00477 Vian-Chr3 4526459 4528752 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00477 1 480 Homeobox Transcription Factor Family AT4G21750 61.677 0.0 636
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00477 K09338 - gmx:100793758 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00477 3 4526459 4528752 Vian3g00477 3 4526459 4528752 ECH