Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00462 ATGATAGGCAAAGGCGGATTTGGAGAGGTTTACAGGGGTATTTTTTCAGATGGAAAAGAAATAGCTGTGAAGAGGCTTACTGGAAGCTCTCGGCAGGGTGCAGTAGAGTTTAAAAATGAAGTTCAAGTTATAGCTAAGCTTCAACATAGAAATTTAGTAAGATTACTCGGATTTTGCTTGGAAGACGATGAAAAGATACTCATTTATGAGTATGTACCAAACAAGAGTCTTGATTATTTTTTATTAGATATCAAGAAGCGAAGATTGCTATCGTGGGCTGAACGACTGAATATTATAAAAGGAATAGCACGAGGAATTTTATATCTGCATGAAGATTCTTGTTTAAAAATAATACACCGTGATCTAAAACCCAGTAATGTTTTATTAGATAGTAATATGAATCCAAAAATTTCTGACTTTGGAATGGCTAGAATTGTTGCCGGAGATGAGATCGAAGCAAGTACGGGCAGAATTGTAGGAACATATGGTTACATGTCTCCAGAATACGCTATGCATGGACAATTTTCGGTGAAATCTGATGTATTTAGTTTTGGTGTTATGGTTCTGGAAATTATTAATGGAAAGAGGAAAGGTTGCTCGTCTGAACCAGAGGTTATTGATGACATCCGCAGACATGCTTGGACAAAATGGAGAAAGGAAACAGCACTAGAAGTGTTGGATCCTGAGATAGAAGGAGCTTATTGTGGTGAAGAAGTGATGAAATGTATCCACATCGGTTTGCTGTGTGTTCAAGAAGATCCAAACGATAGGCCTACAATGGCAAGAGTTGTGCTTTATCTCAATAACCCTTCAATTGACTTGCCTTCCCCTCATGAACCAGGATATTTTAAGCATAACAGGCAACAAGTCAACATCACCACCGATAAAGAATTCGATAATGTCAGTGATTCCGTCAACGAAATTTCTCTAACTAAATTCTTTCCTCGATAA 951 0.3754 MIGKGGFGEVYRGIFSDGKEIAVKRLTGSSRQGAVEFKNEVQVIAKLQHRNLVRLLGFCLEDDEKILIYEYVPNKSLDYFLLDIKKRRLLSWAERLNIIKGIARGILYLHEDSCLKIIHRDLKPSNVLLDSNMNPKISDFGMARIVAGDEIEASTGRIVGTYGYMSPEYAMHGQFSVKSDVFSFGVMVLEIINGKRKGCSSEPEVIDDIRRHAWTKWRKETALEVLDPEIEGAYCGEEVMKCIHIGLLCVQEDPNDRPTMARVVLYLNNPSIDLPSPHEPGYFKHNRQQVNITTDKEFDNVSDSVNEISLTKFFPR 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00462 316 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 1 71 - -
Vian3g00462 316 FunFam cysteine-rich receptor-like protein kinase 10 72 274 - -
Vian3g00462 316 Gene3D Transferase(Phosphotransferase) domain 1 73 273 - -
Vian3g00462 316 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 2 288 - -
Vian3g00462 316 SMART serkin_6 1 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00462 316 ProSiteProfiles Protein kinase domain profile. 1 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00462 316 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Vian3g00462 316 Pfam Protein tyrosine and serine/threonine kinase 2 265 IPR001245 GO:0004672|GO:0006468
Vian3g00462 316 ProSitePatterns Protein kinases ATP-binding region signature. 2 24 IPR017441 GO:0005524
Vian3g00462 316 PIRSF ILK 1 278 - -
Vian3g00462 316 SUPERFAMILY Protein kinase-like (PK-like) 1 288 IPR011009 -
Vian3g00462 316 Gene3D Phosphorylase Kinase; domain 1 2 72 - -
Vian3g00462 316 CDD STKc_IRAK 2 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00462 Vian-Chr3 4412982 4414318 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00462 2 316 Receptor kinase-like Gene Family AT4G23140 55.963 3.81e-126 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian3g00462 PK_Tyr_Ser-Thr 2.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00462 - - vun:114191742 602.053