Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00461 ATGGCTTCGTATCTCAAATACGTGATACCCTTTATATTTTCTATCATCTTCAACTTCTCTGCCATTAGAGCACAGGGCCTTTCTTATCAGTACCAAGTTTGTTCAACAAACAAATTCACTCCCAATAGCACCTTCCAAAGCCACCTCACAACCCTCTTCTCTTCCTTAACTTCTGAAGCCTCCAACAATGTCCAATTCTTCAACAACACCATCACGGGGATAGACTCTTCCTACACAGTCTACGGATTATTCATGTGCAGGGGTGACATCCCCTCCGACATGTGTAATCACTGTGTCGGAAACGGAACACAGAGACTATCCGCAGACTGCGCCTTGTCCAAAGCAGCAGTGGTGTATTACGATGAGTGCATAGTTAGGTATTCCAACCGTTCTTTCTTCTCCAACCTAACCATGCAAGCTGGTTATGCCCTTTGGAACCCCACCAACATGACCAACCAAGAAAGCTTCAAGATTTTACTGTATGACACCATGAACAAAACTGCGGATGAAGCAGCCCATTTTCCTACTGGTTCTAAAAAGTTCGCCACAAGGGAAACAAGCATAGACATATTTCAGAAGCTCTATTGTCTTGCTCAGTGCACACAAGACCTGTCTCCCGGCGATTGCAGAAGCTGTCTGGATAGCTTGATAAACTTGGATCTTCCGGACTGCTGTGCTGGATCCCAGGGAGGAAGAGTTTATTACCCGAACTGCATCATCAGGTTCGAAATTTACCCTTTTTTTCGATCCCTTTCAACGGCACCAACACCATCACCGGCAGGACTCGTTCCTCCGACCAATTCAGGAGAAAATAAAAGAAGTCAATCTCGAACAATTACCTTAATTGTTGTTCCCATTGTTAGTTTGGCGACTTTCGTGAGTCTAATTTACTATGTTCTCAGGAGAAGACCGAGAAAGCTTCGTAAGATTCTTCTTAGAAAAAATTTTGGGGAAGAAAGTTCCACTCTAGAAGGATTGCAATTTGATTTGGCCACCATTAAAGTAGCAACAAATAATTTTTCCCTTGAGAACAAGATTGGAAAAGGTGGATTTGGAGAAGTTTATAAGGGTATTCTTATGGATGGACGACATATAGCTGTTAAAAGACTTTCAACAAGTTCTAGACAAGGTTCAGTCGAGTTTAAAAATGAAATTTTATTGATAGCCAAACTTCAACATAAAAATCTTGTGACGTTGGTAGGATTTTGTTTGGAAGAAGAAGAGAAAATCCTTATTTACGAGTATGTATCAAATGGTGGTCTGGACTACTTTTTATTTGATTTTGGATTGGCTAGAATCATAGACATAGAGCAAAATCGCGTGAAAACTAATCGAATAGTTGGAACATATGGTTATATATGTCACGTGAATATGCAATGTTTGGACAATTCTCAGAAAAATCAGATGTTTTTAGTTTTGGAATTATCATTTTTGAGATTATTACTGGTAAGAAAAATGGAAATTCTTACGGACCAAACCAAGGTGAAGAAGGCTTGA 1497 0.4015 MASYLKYVIPFIFSIIFNFSAIRAQGLSYQYQVCSTNKFTPNSTFQSHLTTLFSSLTSEASNNVQFFNNTITGIDSSYTVYGLFMCRGDIPSDMCNHCVGNGTQRLSADCALSKAAVVYYDECIVRYSNRSFFSNLTMQAGYALWNPTNMTNQESFKILLYDTMNKTADEAAHFPTGSKKFATRETSIDIFQKLYCLAQCTQDLSPGDCRSCLDSLINLDLPDCCAGSQGGRVYYPNCIIRFEIYPFFRSLSTAPTPSPAGLVPPTNSGENKRSQSRTITLIVVPIVSLATFVSLIYYVLRRRPRKLRKILLRKNFGEESSTLEGLQFDLATIKVATNNFSLENKIGKGGFGEVYKGILMDGRHIAVKRLSTSSRQGSVEFKNEILLIAKLQHKNLVTLVGFCLEEEEKILIYEYVSNGGLDYFLFDFGLARIIDIEQNRVKTNRIVGTYGYICHVNMQCLDNSQKNQMFLVLELSFLRLLLVRKMEILTDQTKVKKA 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00461 498 FunFam Cysteine-rich receptor-like protein kinase 25 140 247 - -
Vian3g00461 498 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Vian3g00461 498 Pfam Protein tyrosine and serine/threonine kinase 341 437 IPR001245 GO:0004672|GO:0006468
Vian3g00461 498 ProSiteProfiles Protein kinase domain profile. 340 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00461 498 Pfam Salt stress response/antifungal 149 244 IPR002902 -
Vian3g00461 498 Pfam Salt stress response/antifungal 34 129 IPR002902 -
Vian3g00461 498 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 27 132 - -
Vian3g00461 498 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 301 415 - -
Vian3g00461 498 SUPERFAMILY Protein kinase-like (PK-like) 328 453 IPR011009 -
Vian3g00461 498 Gene3D - 27 132 IPR038408 -
Vian3g00461 498 Gene3D - 138 247 IPR038408 -
Vian3g00461 498 Gene3D Phosphorylase Kinase; domain 1 306 415 - -
Vian3g00461 498 ProSiteProfiles Gnk2-homologous domain profile. 27 132 IPR002902 -
Vian3g00461 498 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 15 257 - -
Vian3g00461 498 ProSiteProfiles Gnk2-homologous domain profile. 138 247 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00461 Vian-Chr3 4379809 4382056 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00461 1 438 Receptor kinase-like Gene Family AT4G05200 39.083 9.13e-98 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian3g00461 PK_Tyr_Ser-Thr 2.2e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00461 - - vun:114191422 741.88