LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian3g00460	ATGTGGTTACTCGTCTGCCTTTACTTTTTGGGTTTCTTGTTCAATTTTTCCATAACCGATGCGACTGAAATTTACTACCTGAATCACAGTTGTTCAAGCAACAAAACCTTCGCTCCAAACAGCACCTACGAATCCAATCTCCGAACCCTCCTCCCGTCCCTATCTTCCCATGCCACCACTGCACTATTCTTCAACACCACATCGGATGGTGGAGACGGCAAGGAAATCATTTACGCCTCCTTCATGTGCCGTGGCGATGTCACCAACCACACGTGCCAAGAGTGCATCAGAACTGCAGCCCAACAAATATCTCAAGTGTGTCCCAACTCCAAAGAGGCCTTAATTTGGTACCACGAATGCTTGGTTCGTTATTCGAACCGTTGTTTTTTCTCCACCTTGGAAGAGTGGCCAAGATTCAACTTCATTGATTACAACGTAACGAATTCAACGAACGAGAAGGGAAGTTATGGGTTCTGGTTGTTATCGAAAACGTTGAGTGATGCTGTGGGTGAGGCAGCGAACGCTGGTCCCGCGGGCACCATGAAATTTGCAACAAAAAACGCTTCCGTGTTTGGGTCCCAGCAAATTCATACTCTGGTTCAATGCACGCCAGATCTATCAAGCGAAGATTGCAGTGAGTGTTTGGGTGATATTATGAAAGATATTTCTTTGTGTTGTCTCGGAAGGATCGGTGGAATGGTTCTATATCCCAGCTGCACTTTGATGTTTGGGTCCAGACATTTCTACAGAGACGTTATCGTTGCTTCGAATGCCACACAAGAATCATTACCTTCAGGAAATAAAATGATTTCACCTGGAGGAATTGTTACGGTTGTCATCTTTCTTGGCTTCACAATGCTAATCTCTTTTCACTGTTATTTCTTATGGAGAAGAGCAAGAAAGCGCAAGTATAAGGTTCTTTTGAAAGAAAACTTTGGTCAAGAAAGTGTCACTCTAGAAGGATTACAATTTGATTTGGTCACAATTCAAGCGGCAACAAATAACTTTTCAAATGAAAACAAGATTGGAAAAGGTGGATTTGGAGAAGTTTACAAGGGCATCTTATCTTCTGGACTACATATAGCAGTAAAAAGATTATCACAAAGTTCTACACAAGGTTCCGTTGAATTTAAGAATGAAGTTTTATTAATAGCCAAATTACAACACAAAAACCTCGTGGAGCTAATAGGCTTTTGTCTAGAGGCACAAGAAAAGATACTTGTATACAAATTCATGCAGAATGGGAGTCTTGATAAATTTCTCTTTGGTCATCAACAAAAAATGTTGAGCTGGTATGAACGTTTCAAAATTATAGAAGGAATTGCTCGAGGAATTCTTTATTTACATGAACATTCTCGACTTAAAGTTATACATCGTGATATCAAACCTAGTAATATTTTATTAGATGAAAATATGAATCCTAAAATCTCAGATTTTGGTATGGCTAGAATTATGGAAATAGACCAAGATCGTGGAAAGACCAAACGTATAGTTGGAACATATGGTTATATGTCACCAGAATATGCAATGTTTGGACAATTTTCTGAAAAATCAGATATTTTTAGTTTTGGAGTTATGGTTTTGGAGATTATTACAGGAAAAAAGAACACAAGTTCTCATGAATCACGTTACATGCCAAATGGACTCATGAGCTATGTTTGGAGAAAATGGATGGATGAAACACCATTGAGCATATTAGACCCGTTTTTGGAAGAAAATTATTCTAGAATTGAAGTAATTAAGTGTATTCATATTAGTTTATTATGTGTTCAAGAAAACAAAAATATTAGACCTACAATAGCAGATGTTGTTTCATATCTTGATGGTCGTCACACGATTGAATTTCCATCTCCACAAGAACCAGCATATTTGTTGTTCGACAAGATGGATACAAAAATAGTCTCAGAACACTATTCTGTTAATGAGATGTCCATCAGTACATATTATGCTCGATAA	1956	0.3814	MWLLVCLYFLGFLFNFSITDATEIYYLNHSCSSNKTFAPNSTYESNLRTLLPSLSSHATTALFFNTTSDGGDGKEIIYASFMCRGDVTNHTCQECIRTAAQQISQVCPNSKEALIWYHECLVRYSNRCFFSTLEEWPRFNFIDYNVTNSTNEKGSYGFWLLSKTLSDAVGEAANAGPAGTMKFATKNASVFGSQQIHTLVQCTPDLSSEDCSECLGDIMKDISLCCLGRIGGMVLYPSCTLMFGSRHFYRDVIVASNATQESLPSGNKMISPGGIVTVVIFLGFTMLISFHCYFLWRRARKRKYKVLLKENFGQESVTLEGLQFDLVTIQAATNNFSNENKIGKGGFGEVYKGILSSGLHIAVKRLSQSSTQGSVEFKNEVLLIAKLQHKNLVELIGFCLEAQEKILVYKFMQNGSLDKFLFGHQQKMLSWYERFKIIEGIARGILYLHEHSRLKVIHRDIKPSNILLDENMNPKISDFGMARIMEIDQDRGKTKRIVGTYGYMSPEYAMFGQFSEKSDIFSFGVMVLEIITGKKNTSSHESRYMPNGLMSYVWRKWMDETPLSILDPFLEENYSRIEVIKCIHISLLCVQENKNIRPTIADVVSYLDGRHTIEFPSPQEPAYLLFDKMDTKIVSEHYSVNEMSISTYYAR	651

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian3g00460	651	Pfam	Protein tyrosine and serine/threonine kinase	338	547	IPR001245	GO:0004672\|GO:0006468
	Vian3g00460	651	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	456	468	IPR008271	GO:0004672\|GO:0006468
	Vian3g00460	651	Gene3D	Transferase(Phosphotransferase) domain 1	412	615	-	-
	Vian3g00460	651	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 10	24	129	-	-
	Vian3g00460	651	ProSiteProfiles	Gnk2-homologous domain profile.	140	248	IPR002902	-
	Vian3g00460	651	ProSiteProfiles	Gnk2-homologous domain profile.	25	129	IPR002902	-
	Vian3g00460	651	CDD	STKc_IRAK	342	609	-	-
	Vian3g00460	651	Gene3D	-	23	129	IPR038408	-
	Vian3g00460	651	Gene3D	-	140	248	IPR038408	-
	Vian3g00460	651	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	297	411	-	-
	Vian3g00460	651	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	27	646	-	-
	Vian3g00460	651	Pfam	Salt stress response/antifungal	31	126	IPR002902	-
	Vian3g00460	651	Pfam	Salt stress response/antifungal	158	244	IPR002902	-
	Vian3g00460	651	ProSitePatterns	Protein kinases ATP-binding region signature.	342	364	IPR017441	GO:0005524
	Vian3g00460	651	SUPERFAMILY	Protein kinase-like (PK-like)	320	642	IPR011009	-
	Vian3g00460	651	ProSiteProfiles	Protein kinase domain profile.	336	614	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian3g00460	651	Gene3D	Phosphorylase Kinase; domain 1	298	411	-	-
	Vian3g00460	651	FunFam	cysteine-rich receptor-like protein kinase 10	412	614	-	-
	Vian3g00460	651	SMART	serkin_6	336	588	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian3g00460	Vian-Chr3	4374955	4378565	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian3g00460	9	651	Receptor kinase-like Gene Family	AT4G05200	43.304	0.0	530

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vian3g00460		Pkinase	7.7e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian3g00460	-		-	gmx:100792162	1006.51