Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00459 ATGAGAATCATGATTACCAAGTCCAAAAATAGTCTAAAACTGTTCCTTTTTTGCACCCTTGTGCTCACCGTTACAGAAACATCTGCTTCGGTGTTCAACAACGTTAGCTGCTCCAGCAACCACACTTTCACTCCAAACACCACCTTCAATGCCAACCTCAACACCCTTCTCTCCTACCTTTCCTCCAACGTCACCAACAACTTTAGATTCTTCAACACAACATCTGGGGAGGGTTCGGACACCGTCTATGGCCTCTACATGTGCCGTGGAGACGTGCCGTTTGCTCTGTGCAGAGAGTGTGTGGGTTTCGCGACCCTAAGCATAGCCTCGTCGTGTCCCACATCGAAAGAGGCTGTGATTTGGTACAACGAGTGTTTGTTGCGCTACTCTTACAGGTTCTTCTTCTCTAAAATGGAAGAATGGCCACGGCACCAGGTCAATATCCCATTGGGGGATCCTGTCGTTTTGCACAGTAATAAATTCTACACTGCTTTAGGATCCATTTTCGATGAACTTCCAAATCAAGCAGCACTGGCTCTCAGAGGGTCCAACCCTTATGCTGTTAAGCAAGAAAACGCTTCTGCGAGTGTGACCCTGTATGGCCTCGCTCAGTGCACACCAGACTTGGCCGCCGGAGATTGCAAACGGTGTATCGCCGATGCGGCGGCGGAATTCGCCGTGTCTTGTTGCGGAGGGAGCATAGGGGCAAGTGTTCTGTTTCCCAGTTGCATTGTTAGGTATGAAACGTATCCGTTTTATCAGCATTCAGGAACCTCCGCGCCAACAACGATTAAGGGTTCAGGAAATATTCGCACTGAAGTGATTGTGATAGCCGTTGTCATGGTTGTCGTTTTGGTAATCATTTTTTTCTTTGGCTACTACGGTTTCAACCGCATTAAAGCGAGAAAGAAAAGCAAGGCCAGTGACGACAGAGAAAACTTTGGGGTAGAAATCAGTGTCTTGGAGTCCTTGGAATTTGATTTTGCTACAATTGAAGCAGCAACAAACAAGTTTTCTGAAGACCGCAGGATCGGCAAAGGGGGTTACGGAGAAGTCTACAAGGGAATCCTTCCTAACGGTGAAGAAGTAGCTGTAAAGAGATTGTCAACAAATTCTAAGCAGGGAGCGGAGGAATTCAAGAATGAAGTGTTGTTAATAGCTAAACTTCAACACAAAAATTTGGTGAGGTTAATAGGATTTTGCCAAGAAGACAGAGAGAAAATACTTATCTATGAATATGTCCCTAACAAAAGCCTTGATCACTTTCTATTTGATCCCGCAAAACACAGAATATTAACTTGGTCAGAGCGGTATAAAATCATTAAAGGAATTGCAAGAGGAATTCTTTATCTTCACGAAGACTCTCGTCTTAAGATTATACATCGTGATATCAAACCAAGCAATGTTCTATTGGACAATGACTTCGATCCAAAAATCTCTGATTTTGGCATGGCAAGGATGGTAGATACAAACCAGATTCAAGGATGTACGAACAGAGTTGTGGGTACATACGGTTACATGCCTCCCGAGTATGCCATGCATGGACACTTTTCTGAAAAGTCTGATGTATTCAGTTTTGGAGTTATGATTCTTGAGATTATCAGTGGAAAGAAGAATTCTTGTTCTTATGAATCATCTCGTGTTGATGATCTCTTGAGTTATGCATGGAACAATTGGAGGGATGTATCACCATTTCAATTGTTGGATCCGAGTCTTGTGGAATCTTACAGTCCAAACGAAGTTGAGAAATGTATGCAGATTGGTTTATTGTGTGTGCAAGAAAATCCTGATGACAGACCAATAATAGGAACCATCGTTTCATATCTTAGCAACCCTTCGGTTGAAATGCCATTCCCTTTAGAGCCAGCGTTTTTCATGCAAGGCAGAGTTAGAAGACATTCAGCTGAACATCAATCATCTTCAGGTTACTCCATCAATCATTCTTTCTCCACCTCTGTAAATAACATGTCCACTACCGTATTCTTCCCTAGATACATGGCCCTTTTTTCCTTGAAACATGCTCTCTTCTTCATGTTTCTTATCTTTACCACTGTCCACGCATCAGATGACCCTATATTCCTTCGCCAAAATTGCACAACCAACGAAACCTTCACCTCCAACACCACTTTCCAACTCAACCTCCGCACCCTCTTGTCTTCCCTATCTTCCCTTGCCACCCGAAACACCCAATTTCGCAACGCCACAGTATCCGGCGGAAGCCCCTCCGACACAGTCTACGGTCTCTTCCTCTGCCGCGGCGACGTGCCCCCTCAACTCTGTCAACAGTGTGTCCTGAACGCGACACAAAGACTCGGCAACCAAAACACAGATACATGCAAGTTTGCGAAAAGCGCTATAATTTGGTATGACGAATGTTTGGTTCGATATTCCAACAGGAACTTCTTCTCCACGGTGGAGACAAGGCCCAGAATGCGTCTGCGGAACACCGCCAACATTTCTGACACAAAAAGCTTCTTGCGCTTGTTGTACACCACCTTGAATGAAACCGCAGACGAGGCAGCGAATTCTTCTAATGTTGATAAGTTATACGCCACAAAACAAGCTAATATCTCTGGGTTTCAGACCCTCTACTGTCTGACTCAGTGCACACCGGATTTATCACCCCAAGATTGCAGAAGGTGTCTCAGTGATGTGATAGGGGACCTTTCATGGTGTTGTCCTGGAAGCCAAGGAGGAAGAGTTTTGTATCCAAGTTGTAACTTTAGGTATGAGCTCTATCCTTTCTACAGAATGGATTCTCCGGCACCCGAAGCAAATGTTAGTCCTACAGCTTCTACGATAAAAAAAGGTGAAGCTGGAAAGAGAGTCGTCTCATCAGAGATAGCAACTGCAACTTTTGTTTCAATTGACTCCACCAAAGACAAACCAAACACCACATTCCAAACCAACCTCAACCTCCTCCTCTCTTCCCTTTCTTCCAAGGCCACCGAAGCCACCCAATTCTACAAAACAACAATTGCCACCGAAACCCCCAACCCCGTCAAGGGCCTCTTCCTCTGCCGCGGCGACACCCTCGCCGCCGCCTGCCACGACTGCGTCACCGCTGCAGCAGCGGACCTAAAACGCCTGTGCCCGGTTCAGAAGGAGGCCATAATCTGGTACGACGTGTGCATGGTACGCTACTCCGACCAATACCTCAATAACATCGTACCTGGAGTGGATATGTCTGATTCCAAAAACGTGACTAGCATTAGCATTAGTCTTGACCGATTCAACGAGTTGCTCGCGGGATTGCTGAATTCCCTGGCAACGAAAGCTAAGAATTCCTCAGATAAGAAATTTGCGACAGGGGAAGTGAACCTCACGAGTTCGGTGACCCTTTATGGGTTGGTGCAGTGCACGCCAGATTTGTCTTTGTTCGATTGCAGGATGTGTTTTAGCAGCGCCATTGCGTCTGTTCCGAATTGCTGTGATGGGAAACGAGGGGCAAGAGTGTTGCTTCCTGGATGCAATATCAGATATGAAGTGTATCCATTTTACAGCAGCAATAACACATTGATCCCAACGATTGTGAAGCCTCGTCCTTCAGGACGGAGTGGTGTTGAAGTGATTCTTACATTTGTTATCCCTATTGTTGCTGCGATGGTGCTTTTCACTTTTGGGATCTGTACTGTCATGAGAAAGCAAGCAAAGAATGTGATACAATTGTGGAAGCAAACGTTTATCTCAGCGATTCTCTCCGAGATGTGCATCTTGAAATCCTCTTCAACCCACTTGGCTATAATTGTCTCCTTGTTTCTGTTCCTAAACTCTGCAAGTGAAGCTGCTCCTACATATACCACACATGCCTGCACAAATGGATCCTTTTACCTACCCAACACAACCTTCCAAACCAACTTGAACCTCCTTCTCTCATCCCTCGTCTCCAACGCCACCCTCCACGATGGTTACTACCTCACCAACATCTCCCTTGGAGCCCCTGGTGAGGTCAAGGGACTCTTCCTCTGCCGCGGTGACGTCACCCCCTCAGTCTGCCACGACTGTGTCGCCGCCGCTGCCGACAACATCACACGCCTCTGCACCAAAACTACAGAGTCTGTAATATGGTATGACGAGTGTATGGTGCGCTACTCCAACCTTTCCATCCTCAACAACATAGTACCAAGTGTCGACATCGATTCCCAACAGAGCGTTCCTGATTCCGATAGTACTAGCTTCATCAATTTTCTTGCATCCGCGCTGAATGGTGTGGTGCAGGATGCCATGAATTCTCTTTCGGGTAGAATGTTTGCCACAAGAGAAGCGAATTTCACTAGCTCAATGAATCTGTACGCCCTGGCGCAGTGTAGGCCTGATTTATCCGCCTTCGATTGCAACATGTGCTTAAGAGGCGCCATGAGTAGCCTCGGTGAAGGAAAACGAGGTGCACGCAACCTTCTTCCTAGTTGTAATGTCAGATATGAATTGTACCCTTTCTACAATGTTTTCGCCGTCTCCACCAAACCAGAGTCTCTTTCCCCATCTTCAGGAAAAAACAATATCTCTATAATTCTGGCTATTGCCGTCCCAATTGTCGTTGCGGTGCTACTTTTCATTGTTGGCGTCTTCTTCCTACGCAAGAGGGCAAGCTATAAATACAATAACTCTTTTGGCCAGGATTCAATTGTGGAAGGTCTTAGCGATGGGGACTCCTTGCAATTTGACCTGGCTACGATTGAAGCTGCCACGAACAGATTCTCGGATGAAAACAAGATTGGCAAAGGTGGATTTGGTGTGGTTTATAAGGGTGTCCTCCCTGACGGACAGGAGATAGCTGTGAAGAGGTTGTCAGTAACCTCCTTGCAGGGTGCAGTAGAGTTCAGGAATGAAGCCGCCCTTGTGGCCAAGCTTCAACATAGAAATTTAGTGAGACTATTGGGATTTTGCTTGGAGGGCCAGGAAAAGATTCTTATCTATGAATACATACCAAACAAAAGCCTTGATTACTTTCTATTCAATTCTATGAAGCAAAGAGAGTTAGATTGGTCACAACGCTACAAGATTATAGTTGGCATTGCTAGAGGAATTCTTTATTTACATGAAGATTCTCAACTTAGAATTGTTCACCGTGATGTCAAAGCTAGCAATGTTTTATTAGATGAAAATATGAACCCAAAGATTTCTGATTTTGGCATGGCAAAGATTTTCCAGGCAGACCAGACTCAAGTAAATACAGGAAGAATAGTTGGGACTTATGGTTACATGTCTCCGGAATATGCAATGCGTGGTCAGTTTTCCATGAAATCGGATGTGTTCAGCTTTGGTGTCTTGGTCTTGGAGATTGTGAGTGGCAAGAAGAATACTGATTTTTATCAATCGAATCACGCTGATGACCTCTTAATCTTTGCTTGGAAGAAATGGACAGAGCAAACACCAATGGAGTTTGTGGATCCAACTCTGAGAGGTTCTTGTTCGAGAAATGAAGTAAACAGATGCATCCACATTGGTTTATTATGCGTTCAGGAAAATCCATCAGACCGACCATCAATGGCCACAATTGCACTTATGCTTAACAGTTATTCAGTGACCATGTCAATGCCACGACAACCAGCATCTTTCCTGCGTGGAAGAAATCCTAACAGGTTTAACCGAGAGCTTGACTCTGATCAGTCTACCACCGATCAATCTACCTCCTGTTCAATTCCATACTCTGTGAATGAAGTATCCGTCACTGAAGTATACCCTCGCTAA 5691 0.4523 MRIMITKSKNSLKLFLFCTLVLTVTETSASVFNNVSCSSNHTFTPNTTFNANLNTLLSYLSSNVTNNFRFFNTTSGEGSDTVYGLYMCRGDVPFALCRECVGFATLSIASSCPTSKEAVIWYNECLLRYSYRFFFSKMEEWPRHQVNIPLGDPVVLHSNKFYTALGSIFDELPNQAALALRGSNPYAVKQENASASVTLYGLAQCTPDLAAGDCKRCIADAAAEFAVSCCGGSIGASVLFPSCIVRYETYPFYQHSGTSAPTTIKGSGNIRTEVIVIAVVMVVVLVIIFFFGYYGFNRIKARKKSKASDDRENFGVEISVLESLEFDFATIEAATNKFSEDRRIGKGGYGEVYKGILPNGEEVAVKRLSTNSKQGAEEFKNEVLLIAKLQHKNLVRLIGFCQEDREKILIYEYVPNKSLDHFLFDPAKHRILTWSERYKIIKGIARGILYLHEDSRLKIIHRDIKPSNVLLDNDFDPKISDFGMARMVDTNQIQGCTNRVVGTYGYMPPEYAMHGHFSEKSDVFSFGVMILEIISGKKNSCSYESSRVDDLLSYAWNNWRDVSPFQLLDPSLVESYSPNEVEKCMQIGLLCVQENPDDRPIIGTIVSYLSNPSVEMPFPLEPAFFMQGRVRRHSAEHQSSSGYSINHSFSTSVNNMSTTVFFPRYMALFSLKHALFFMFLIFTTVHASDDPIFLRQNCTTNETFTSNTTFQLNLRTLLSSLSSLATRNTQFRNATVSGGSPSDTVYGLFLCRGDVPPQLCQQCVLNATQRLGNQNTDTCKFAKSAIIWYDECLVRYSNRNFFSTVETRPRMRLRNTANISDTKSFLRLLYTTLNETADEAANSSNVDKLYATKQANISGFQTLYCLTQCTPDLSPQDCRRCLSDVIGDLSWCCPGSQGGRVLYPSCNFRYELYPFYRMDSPAPEANVSPTASTIKKGEAGKRVVSSEIATATFVSIDSTKDKPNTTFQTNLNLLLSSLSSKATEATQFYKTTIATETPNPVKGLFLCRGDTLAAACHDCVTAAAADLKRLCPVQKEAIIWYDVCMVRYSDQYLNNIVPGVDMSDSKNVTSISISLDRFNELLAGLLNSLATKAKNSSDKKFATGEVNLTSSVTLYGLVQCTPDLSLFDCRMCFSSAIASVPNCCDGKRGARVLLPGCNIRYEVYPFYSSNNTLIPTIVKPRPSGRSGVEVILTFVIPIVAAMVLFTFGICTVMRKQAKNVIQLWKQTFISAILSEMCILKSSSTHLAIIVSLFLFLNSASEAAPTYTTHACTNGSFYLPNTTFQTNLNLLLSSLVSNATLHDGYYLTNISLGAPGEVKGLFLCRGDVTPSVCHDCVAAAADNITRLCTKTTESVIWYDECMVRYSNLSILNNIVPSVDIDSQQSVPDSDSTSFINFLASALNGVVQDAMNSLSGRMFATREANFTSSMNLYALAQCRPDLSAFDCNMCLRGAMSSLGEGKRGARNLLPSCNVRYELYPFYNVFAVSTKPESLSPSSGKNNISIILAIAVPIVVAVLLFIVGVFFLRKRASYKYNNSFGQDSIVEGLSDGDSLQFDLATIEAATNRFSDENKIGKGGFGVVYKGVLPDGQEIAVKRLSVTSLQGAVEFRNEAALVAKLQHRNLVRLLGFCLEGQEKILIYEYIPNKSLDYFLFNSMKQRELDWSQRYKIIVGIARGILYLHEDSQLRIVHRDVKASNVLLDENMNPKISDFGMAKIFQADQTQVNTGRIVGTYGYMSPEYAMRGQFSMKSDVFSFGVLVLEIVSGKKNTDFYQSNHADDLLIFAWKKWTEQTPMEFVDPTLRGSCSRNEVNRCIHIGLLCVQENPSDRPSMATIALMLNSYSVTMSMPRQPASFLRGRNPNRFNRELDSDQSTTDQSTSCSIPYSVNEVSVTEVYPR 1896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00459 1896 FunFam Cysteine-rich receptor-like protein kinase 10 1059 1166 - -
Vian3g00459 1896 SUPERFAMILY Protein kinase-like (PK-like) 1552 1862 IPR011009 -
Vian3g00459 1896 ProSiteProfiles Gnk2-homologous domain profile. 692 801 IPR002902 -
Vian3g00459 1896 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1687 1699 IPR008271 GO:0004672|GO:0006468
Vian3g00459 1896 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 948 1053 - -
Vian3g00459 1896 Pfam Salt stress response/antifungal 1390 1477 IPR002902 -
Vian3g00459 1896 Pfam Salt stress response/antifungal 1076 1163 IPR002902 -
Vian3g00459 1896 Pfam Salt stress response/antifungal 159 250 IPR002902 -
Vian3g00459 1896 Pfam Salt stress response/antifungal 818 913 IPR002902 -
Vian3g00459 1896 Pfam Salt stress response/antifungal 698 798 IPR002902 -
Vian3g00459 1896 Pfam Salt stress response/antifungal 1271 1366 IPR002902 -
Vian3g00459 1896 Pfam Salt stress response/antifungal 960 1050 IPR002902 -
Vian3g00459 1896 Pfam Salt stress response/antifungal 37 130 IPR002902 -
Vian3g00459 1896 FunFam cysteine-rich receptor-like protein kinase 10 1642 1844 - -
Vian3g00459 1896 Pfam Protein kinase domain 339 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00459 1896 ProSitePatterns Protein kinases ATP-binding region signature. 1572 1594 IPR017441 GO:0005524
Vian3g00459 1896 Gene3D - 1061 1166 IPR038408 -
Vian3g00459 1896 Gene3D - 691 801 IPR038408 -
Vian3g00459 1896 Gene3D - 1263 1368 IPR038408 -
Vian3g00459 1896 Gene3D - 809 915 IPR038408 -
Vian3g00459 1896 Gene3D - 30 134 IPR038408 -
Vian3g00459 1896 Gene3D - 154 252 IPR038408 -
Vian3g00459 1896 Gene3D - 949 1052 IPR038408 -
Vian3g00459 1896 Gene3D - 1379 1479 IPR038408 -
Vian3g00459 1896 ProSiteProfiles Gnk2-homologous domain profile. 142 252 IPR002902 -
Vian3g00459 1896 FunFam Cysteine-rich receptor-like protein kinase 10 299 413 - -
Vian3g00459 1896 ProSiteProfiles Gnk2-homologous domain profile. 1375 1479 IPR002902 -
Vian3g00459 1896 Gene3D Transferase(Phosphotransferase) domain 1 1642 1849 - -
Vian3g00459 1896 Gene3D Transferase(Phosphotransferase) domain 1 414 616 - -
Vian3g00459 1896 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1262 1892 - -
Vian3g00459 1896 MobiDBLite consensus disorder prediction 1852 1879 - -
Vian3g00459 1896 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 691 800 - -
Vian3g00459 1896 Pfam Protein tyrosine and serine/threonine kinase 1569 1834 IPR001245 GO:0004672|GO:0006468
Vian3g00459 1896 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Vian3g00459 1896 ProSiteProfiles Gnk2-homologous domain profile. 807 915 IPR002902 -
Vian3g00459 1896 CDD STKc_IRAK 1572 1838 - -
Vian3g00459 1896 ProSiteProfiles Gnk2-homologous domain profile. 31 134 IPR002902 -
Vian3g00459 1896 ProSiteProfiles Gnk2-homologous domain profile. 1059 1166 IPR002902 -
Vian3g00459 1896 ProSiteProfiles Gnk2-homologous domain profile. 1265 1369 IPR002902 -
Vian3g00459 1896 CDD STKc_IRAK 344 609 - -
Vian3g00459 1896 FunFam Putative cysteine-rich receptor-like protein kinase 9 154 252 - -
Vian3g00459 1896 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 30 134 - -
Vian3g00459 1896 ProSiteProfiles Gnk2-homologous domain profile. 949 1053 IPR002902 -
Vian3g00459 1896 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Vian3g00459 1896 FunFam Cysteine-rich receptor-like protein kinase 25 809 915 - -
Vian3g00459 1896 SUPERFAMILY Protein kinase-like (PK-like) 324 635 IPR011009 -
Vian3g00459 1896 Gene3D Phosphorylase Kinase; domain 1 1530 1641 - -
Vian3g00459 1896 Gene3D Phosphorylase Kinase; domain 1 298 413 - -
Vian3g00459 1896 SMART serkin_6 1566 1841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00459 1896 SMART serkin_6 338 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00459 1896 FunFam cysteine-rich receptor-like protein kinase 10 414 616 - -
Vian3g00459 1896 ProSiteProfiles Protein kinase domain profile. 338 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00459 1896 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 1527 1641 - -
Vian3g00459 1896 ProSiteProfiles Protein kinase domain profile. 1566 1841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00459 1896 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 1264 1369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00459 Vian-Chr3 4355614 4370241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00459 662 916 Receptor kinase-like Gene Family AT4G05200 44.574 6.49e-55 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian3g00459 PK_Tyr_Ser-Thr 2.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00459 - - var:108324780 3613.54