Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00458 ATGCTTATTTATGAATTTGTGCCTAATAAAAGCCTGGACTACCTTCTCTTTGAACCATACAAAAGTAATCATATGAACTGGTCAGACCGTTACAGAATTATACAAGGAATTACACAGGGAATTTTATATCTACATGAACATTCACGATTAAAAGTTATACACCGTGATCTTAAACCCAGTAATATATTATTAGATAATGATATGAATCCAAAGATTTCAGATTTTGGATTAGCAAGAATGGTTGCTGTAGATCAATATCAAAGAGAAACAAAGAGAATCGTGGGAACATATGGATATATGTCACCAGAATATGCAATGCATGGACAATTCTCAGAAAAATCAGATGTTTTCAGTTTTGGAGTTATAATATTAGAAATAGTAAGTGCGAAAAAAAATGCACGAGAAGTTTTCCAAGATGATGATGACCTCTTGAGCTATGCTTGGGATCAATGGAGGGATCGGACACCATTAAACATATTAGACAAAAATATTAAGGAATCTTGCAATCACAGTGAAGTCATAAAATGCATCCAAATAGGTTTATTATGTGTACAAGAGAAGCCTCATGACAGACCTACAATGACACAAGTTGTTTCATATCTCAGTAGCTCTTTATCTGAGTTGCCATTTCCTGAAAAACCCATAAACTCTAATCAAAGTGGACTAGTTCAAAAGATGTTAGTAGGAGGATCCAGTTCAGGTTCTGCGCAAACAATAAATGAAATGTCTGTGAGCATATTTATCCCTCGGTAG 753 0.344 MLIYEFVPNKSLDYLLFEPYKSNHMNWSDRYRIIQGITQGILYLHEHSRLKVIHRDLKPSNILLDNDMNPKISDFGLARMVAVDQYQRETKRIVGTYGYMSPEYAMHGQFSEKSDVFSFGVIILEIVSAKKNAREVFQDDDDLLSYAWDQWRDRTPLNILDKNIKESCNHSEVIKCIQIGLLCVQEKPHDRPTMTQVVSYLSSSLSELPFPEKPINSNQSGLVQKMLVGGSSSGSAQTINEMSVSIFIPR 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00458 250 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 244 - -
Vian3g00458 250 ProSiteProfiles Protein kinase domain profile. 1 205 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00458 250 SMART serkin_6 2 201 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00458 250 FunFam cysteine-rich receptor-like protein kinase 10 7 208 - -
Vian3g00458 250 SUPERFAMILY Protein kinase-like (PK-like) 1 215 IPR011009 -
Vian3g00458 250 PIRSF ILK 1 210 - -
Vian3g00458 250 ProSitePatterns Serine/Threonine protein kinases active-site signature. 52 64 IPR008271 GO:0004672|GO:0006468
Vian3g00458 250 Pfam Protein tyrosine and serine/threonine kinase 1 201 IPR001245 GO:0004672|GO:0006468
Vian3g00458 250 Gene3D Transferase(Phosphotransferase) domain 1 7 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00458 Vian-Chr3 4344881 4345937 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00458 1 248 Receptor kinase-like Gene Family AT4G23150 53.012 8.52e-89 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian3g00458 Pkinase 2e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00458 - - var:108324781 493.041