Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00453 ATGGCCGTACCTATGGCCGCTGTTTCTTGCATGCTTGCTTTTCTTCTCTCTTGTCTAATATCTAGAGCCAGCGCCCAGGTTACCCACAACTACTGTGATAACAAGGAAGGGAACTACACAATCAATAGCACCTATCACAACAATCTCAACACCCTTCTATCCAAGCTTTCTTCCCACACAGAAATTAATTATGGTTTCTACAACTTCTCATATGGTCAAAACAATGACAAAGTAAACGCCATTGGGCTATGCAGAGGAGATGTTGAGCCAGATAAGTGCCGCAGGTGCCTCAACGATTCTGCAGCCACGATCACACAGCTTTGTCCAAACCAGAAAGAGGCATATTTGTGGTTGAAGACCAACGAATGCCAGTTGAGTTATTCTCCGCGCTCAATATTCGGTGTCGTGGAATCTTCTCCTTGGTTCTCCATGAAGAACAGTAACAATGTAACGGAACCGGATAAGTTTAACCAAGCCCTCACCAACTTAATGAAGAATCTCACAGCCGTGGCTGCATCAGGTGACTCTCGTCGCAAGTATGCTGCGGATAGTGTTGATGTTTCAACTCTTCAAACCATATATGGTCTTGTGCAGTGCACCCCTGATTTGTCCGAGACAGACTGCAATAGATGCTTGGATGGGGCTATATACGAAATCTCATCGTGTTGTGCGAACAAGAAGGGTGTTAGAGTTGTTAGACCAAGTTGTAATATTAGATTCGAAACTTACAGCTTCTACGATCAAACGCCTAAATTAGACCCTGATGTAATACCACCATCACCATCATCTCCTTCCTCCTTCAATAACACTTCCGCCAAAGAGAGCAAAAACACAACAATTGTCATTGCCGTTGTTGTTTCTACTGTCGTTCTTGCTGTCGTTTCCCTCCTTTGTCTCTGCAGTTATTTAAGGAGGAGGAAGGCAAGAAAACGTTTAGCAGTTAATCAAGACGATGATGACATCGAAATTACTCAGTCATTGCAATTTGACTTCGAGACAATACGAGTTGCTACAGAAGACTTCTCTGATTCTAATAAACTTGGAGAAGGTGGATTTGGAGCTGTTTACAAGGGTAGGCTCCCCAATGAACAGATAATTGCGGTCAAAAGGTTGTCAAGTGGATCCAGCCAAGGAGACACAGAGTTTAAGAATGAAGTGCTTTTAGTGGCCAAGCTTCAGCACAGAAATTTAGTCAGACTACTTGGTTTCTGCTTGGAAGGAAGAGAAAGGCTACTCGTCTATGAGTTTGTTCCTAACAAAAGCCTTGATTATTTCATATTTGATCCAGCCAAGAAAGCACTGTTGGATTGGGCAATGCGATACAGAATCATAAAAGGTATTAGCCGAGGGCTTCTCTACCTTCACGAAGATTCTCTTCTGCGTATTATACATCGTGATCTCAAAGCAAGCAATATTCTCTTAGACGAAGAGATGAATCCTAAGATAGCAGATTTTGGAATGGCAAGACTGGTTTTACTGGATCAAACTCACGCAAATACAGATAGAGTTGTGGGAACCTATGGATACATGGCACCGGAGTACATAACGCAAGGACAATTTTCGGTGAAGTCAGATATCTTTAGTTTTGGTGTACTGCTTCTTGAGATCGTAAGTGGCCAGAAAAACAGTAGCTTTCGTCATGGGGAGAATGTTGAAGATCTACTGAGCTTCACATGGAGAAACTGGAGGGAGGGAACAGCTGTAAACATTGTAGATCCATCATTGAACAACAATTCACTAAATGAAGTGATGAGATGCATTCATATTGGTTTGCTCTGTGTTCAAGAAAACATAACTAATAGACCAACCATGGCGACCGTTATGCTCATGCTGAGTAGCTATTCTCTCAGTCTTCCCATCCCTTCTGAACCTGCATTTTATGCCCACAGTACAACTAGAAGCCTTCCAGCCACGTATTCATGGGGACACAGTTCAAGGGCAACAACAAATAAATCTGCTCAAGAGTCAGAAAATGAGAATTCAATAACTGAGCTGTACCCTCGCTAG 2007 0.427 MAVPMAAVSCMLAFLLSCLISRASAQVTHNYCDNKEGNYTINSTYHNNLNTLLSKLSSHTEINYGFYNFSYGQNNDKVNAIGLCRGDVEPDKCRRCLNDSAATITQLCPNQKEAYLWLKTNECQLSYSPRSIFGVVESSPWFSMKNSNNVTEPDKFNQALTNLMKNLTAVAASGDSRRKYAADSVDVSTLQTIYGLVQCTPDLSETDCNRCLDGAIYEISSCCANKKGVRVVRPSCNIRFETYSFYDQTPKLDPDVIPPSPSSPSSFNNTSAKESKNTTIVIAVVVSTVVLAVVSLLCLCSYLRRRKARKRLAVNQDDDDIEITQSLQFDFETIRVATEDFSDSNKLGEGGFGAVYKGRLPNEQIIAVKRLSSGSSQGDTEFKNEVLLVAKLQHRNLVRLLGFCLEGRERLLVYEFVPNKSLDYFIFDPAKKALLDWAMRYRIIKGISRGLLYLHEDSLLRIIHRDLKASNILLDEEMNPKIADFGMARLVLLDQTHANTDRVVGTYGYMAPEYITQGQFSVKSDIFSFGVLLLEIVSGQKNSSFRHGENVEDLLSFTWRNWREGTAVNIVDPSLNNNSLNEVMRCIHIGLLCVQENITNRPTMATVMLMLSSYSLSLPIPSEPAFYAHSTTRSLPATYSWGHSSRATTNKSAQESENENSITELYPR 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00453 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Vian3g00453 668 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 21 664 - -
Vian3g00453 668 SMART serkin_6 341 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00453 668 ProSiteProfiles Gnk2-homologous domain profile. 138 245 IPR002902 -
Vian3g00453 668 Pfam Salt stress response/antifungal 148 243 IPR002902 -
Vian3g00453 668 Pfam Salt stress response/antifungal 32 128 IPR002902 -
Vian3g00453 668 FunFam Cysteine-rich receptor-like protein kinase 10 304 416 - -
Vian3g00453 668 FunFam cysteine-rich receptor-like protein kinase 10 417 618 - -
Vian3g00453 668 FunFam Cysteine-rich receptor-like protein kinase 10 141 245 - -
Vian3g00453 668 CDD STKc_IRAK 347 607 - -
Vian3g00453 668 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 25 132 - -
Vian3g00453 668 ProSiteProfiles Protein kinase domain profile. 341 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00453 668 Gene3D Transferase(Phosphotransferase) domain 1 417 618 - -
Vian3g00453 668 Pfam Protein kinase domain 342 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00453 668 MobiDBLite consensus disorder prediction 644 668 - -
Vian3g00453 668 ProSiteProfiles Gnk2-homologous domain profile. 27 132 IPR002902 -
Vian3g00453 668 SUPERFAMILY Protein kinase-like (PK-like) 323 611 IPR011009 -
Vian3g00453 668 Gene3D - 24 131 IPR038408 -
Vian3g00453 668 Gene3D - 139 245 IPR038408 -
Vian3g00453 668 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524
Vian3g00453 668 Gene3D Phosphorylase Kinase; domain 1 302 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00453 Vian-Chr3 4269469 4272280 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00453 14 668 Receptor kinase-like Gene Family AT4G38830 47.970 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian3g00453 Pkinase 3.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00453 - - var:108324785 1263.83